User: mathieu.lajoie

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Posts by mathieu.lajoie

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Comment: C: conceptual question about FDR, FDR adjusted p-value and q-value
... So if my understanding is correct, when we report "FDR adjusted p-values" obtained from p.adjust(p, method = "BH"), citing Benjamini and Hochberg 2005 is not completely accurate? What should we cite? Thanks. ...
written 9 months ago by mathieu.lajoie0
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Comment: C: conceptual question about FDR, FDR adjusted p-value and q-value
... The FDR adjusted p-value is not equal to "original p-value * number of genes/rank of the gene" ...
written 9 months ago by mathieu.lajoie0
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Comment: C: how to use biomaRt with ensembl build 37
... Hi Thomas, As you can see below, I've tried your solution but it keeps loading version 77 ... > library(biomaRt) > grch37 = useMart(biomart="ENSEMBL_MART_ENSEMBL", host="grch37.ensembl.org", path="/biomart/martservice") > head(listMarts(grch37))               biomart                     ...
written 4.5 years ago by mathieu.lajoie0

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