User: cannin

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cannin20
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20
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New User
Location:
United States
Last seen:
4 months, 1 week ago
Joined:
3 years, 1 month ago
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Posts by cannin

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Rcellminer failing to load because of rcdk
... The best set of instructions I've seen for installing Java on OSX in a way that is compatible with Java-based libraries like rJava, rcdk, etc on OSX Yosemite and above are here:  https://stackoverflow.com/questions/30738974/rjava-load-error-in-rstudio-r-after-upgrading-to-osx-yosemite Specifically ...
written 4 months ago by cannin20
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Comment: C: How to Represent Data from Various Different Assays in a Single Class?
... Thanks, this project is certainly along the lines of the problem I outlined. I will look through the code to see if there is anything I can suggest.   ...
written 2.9 years ago by cannin20
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How to Represent Data from Various Different Assays in a Single Class?
... I have a number of samples that have been profiled by different assays. For example, let's say 100 cell lines that have been assayed for the following features: gene expression (~20K genes), metabolism (1000 metabolites), and miRNA expression (>1000). I'd like to store these together in in a sing ...
biobase written 2.9 years ago by cannin20 • updated 2.9 years ago by Levi Waldron380
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Answer: A: paxtoolsr how to extract Modificationfeature related to a node
... This example should pull out information about protein modification features for a given gene. It uses the traverse() command in paxtoolsr. Since the results from traverse is an XML document you need to use XPath with xpathSApply(). library(paxtoolsr) # Get the protein Uniprot ID for a given HGNC ...
written 3.1 years ago by cannin20

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