User: mviterson

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mviterson10
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New User
Location:
Netherlands
Last seen:
1 month, 1 week ago
Joined:
3 years ago
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m********@gmail.com

Posts by mviterson

<prev • 9 results • page 1 of 1 • next >
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Answer: A: Error starting MethylAid visualize function
... Hi Andrew, Are you able to run the example see ?summarize and use visualize(data).  I'm able to run it without any problems using MethylAid version 1.10.0 and shiny version 1.0.5 on Ubuntu using emacs. Could you compare str(data) from the example with your summarized data. It seems that the initia ...
written 5 weeks ago by mviterson10
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Comment: C: mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rt
... Thanks this is a really useful to know! ...
written 9 months ago by mviterson10
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Comment: C: mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rt
... Thank you Valerie for the explanation. I will check other Ensembl version as suggested by Johannes. Just a thought; would it be possible for all version of the Ensembl gtf's to be build on the fly?   ...
written 9 months ago by mviterson10
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Answer: A: mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rt
... The mismatch between annotationhub and direct download using rtracklayer does not only involve ensembl gtf v71. For example, I got similar results for ftp://ftp.ensembl.org/pub/release-70/gtf/homo_sapiens/Homo_sapiens.GRCh37.70.gtf.gz Furthermore, all possible snapshot dates gave showed the same m ...
written 10 months ago by mviterson10
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mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rtracklayer
... Dear all, I expect AnnotationHub resource for ensembl v71 and a direct download using rtracklayer should give identical results. The code snipped below shows that there are some gene_identifiers missing in the AnnotationHub extracted data. Is there some additional processing done in the AnnotationH ...
annotationhub written 10 months ago by mviterson10 • updated 10 months ago by Valerie Obenchain ♦♦ 6.4k
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Answer: A: Rsamtools installation error on R-3.2.0
... Dear Martin Morgan, Thanks for the clarification! Cheers, Maarten     ...
written 3.0 years ago by mviterson10
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Rsamtools installation error on R-3.2.0
... Dear all, I have a fresh installed R-devel (R-3.2.0) and got the following error when installing Rsamtools using BiocLite from BiocInstaller: gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/local/include -I"/usr/local/lib/R/library/S4Vectors/include" -I"/usr/local/lib/R/library/IRanges ...
software error written 3.0 years ago by mviterson10
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Comment: C: Gviz adding Custom Track
... Hi Florian, Thanks for your help! This is exactly what I needed. Cheers, Maarten   ...
written 3.1 years ago by mviterson10
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Gviz adding Custom Track
... Dear all, I would like to create a custom track for Gviz. I found the CustomTrack class but didn't get it working properly. Plotting only the CustomTrack works as expected however, when plotting a tracklist the CustomTrack appears twice on different vertical locations. Does anyone have experience ...
gviz written 3.1 years ago by mviterson10 • updated 3.1 years ago by James W. MacDonald45k

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