User: Andy Lynch

gravatar for Andy Lynch
Andy Lynch80
Reputation:
80
Status:
Trusted
Location:
United Kingdom
Last seen:
1 month, 3 weeks ago
Joined:
3 years ago
Email:
a*********@cruk.cam.ac.uk

Posts by Andy Lynch

<prev • 11 results • page 1 of 2 • next >
1
vote
0
answers
138
views
0
answers
Job: PhD opportunity in St Andrews (Proteomic and Genomic analysis of Oesophageal Cancers)
... Analysis methods for the proteogenomics of oesophageal cancer. Poster: 04 SEPTEMBER 2017 [Closing date 1st October] We invite enquiries from qualified and highly motivated applicants for a 3 year PhD studentship comprising of tuition fees (Home/EU) and stipend. Background Oesophageal cancer is a ...
proteomics job cancer genomics written 9 weeks ago by Andy Lynch80
0
votes
0
answers
573
views
0
answers
Job: Job: Lecturer/Senior Lecturer/Reader in Statistics (including Computational Biology) at The University of St Andrews
... We are looking for outstanding statisticians to expand our research base in Statistics at the University of St Andrews. Applications are invited from candidates at Lecturer, Senior Lecturer and Reader levels. Salary:   Grade 7 - £39,324 - £48,327 per annum   Grade 8 - £49,772 - £55,998 per annum ...
jobs job written 4 months ago by Andy Lynch80
0
votes
1
answers
261
views
1
answers
Answer: A: Get the same gene for multiple Probe ID
... It is correct that you should get multiple probes for some genes, and Lluis is correct that in general some are meant to target specific single transcripts, some a subset of transcripts, and some probes intend to target all transcripts of a gene. In the case of AKT3, it looks as though there are alt ...
written 12 months ago by Andy Lynch80
0
votes
3
answers
327
views
3
answers
Answer: A: Error while running SomaticSignatures
... I think that  seqlevelsStyle(vr_new)<-"NCBI"  should allow you to use your first choice of reference genome. Best wishes, Andy ...
written 16 months ago by Andy Lynch80
0
votes
3
answers
327
views
3
answers
Comment: C: Error while running SomaticSignatures
... What does seqlevelsStyle(vr_new) report? Presumably something different to seqlevelsStyle(BSgenome.Hsapiens.1000genomes.hs37d5) ? ...
written 16 months ago by Andy Lynch80
0
votes
1
answers
249
views
1
answers
Answer: A: Annotation for Mouse Illumina Expression Chip V6.1.1
... Hi Smt8n, Those look to me to be ArrayAddressIDs that are in illuminaMousev1p1.db. An (inelegant) approach to extracting them would be: library("illuminaMousev1p1.db") library(DBI) fullanno<-illuminaMousev1p1fullReannotation() fullanno[fullanno$ArrayAddress %in% c(10243, 10280, 10575, 2004 ...
written 16 months ago by Andy Lynch80
2
votes
2
answers
305
views
2
answers
readVCFAsVRanges in VariantAnnotation broken by an FTZ format?
... I've noticed that the inclusion of a "##FORMAT=<ID=FTZ,Nu..." line in a vcf file seems to break the readVCFAsVRanges() function (although not the readVCF() function). CaVEMan, for example, includes such a line in its vcf files. Replacing all instances of FTZ with, e.g., FUZ in the vcf file avoids ...
variantannotation vcf readvcfasvranges written 16 months ago by Andy Lynch80 • updated 16 months ago by Michael Lawrence9.8k
2
votes
0
answers
330
views
0
answers
Job: Two Post-doctoral positions at the CRUK Cambridge Institute
... Applications are invited for two postdoctoral research associate positions to work with Professor Simon Tavaré FRS and other members of the Statistics and Computational Biology Laboratory at the Cancer Research UK Cambridge Institute in close collaboration with colleagues on two International Cancer ...
cancer job methylation rna-seq written 17 months ago by Andy Lynch80
1
vote
0
answers
731
views
0
answers
Job: Research Associate - Cambridge UK - SOUND project - methods for liquid biopsies
... See http://www.jobs.cam.ac.uk/job/7372/ for full details SOUND is an international research project funded by the European Commission (EC) within its Horizon 2020 Research and Innovation programme "Personalizing Health and Care". Its objective is to create the bioinformatic tools for statistically ...
job computational biology liquid biopsy written 2.4 years ago by Andy Lynch80
0
votes
0
answers
612
views
0
answers
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
... See http://www.jobs.cam.ac.uk/job/6208/ for full details   Applications are invited for a postdoctoral research associate position to work with Professor Simon Tavaré FRS and other members of the Statistics and Computational Biology Laboratory at the Cancer Research UK Cambridge Institute. The pos ...
sequencing job methylation expression written 2.8 years ago by Andy Lynch80

Latest awards to Andy Lynch

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 253 users visited in the last hour