User: Andy Lynch

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Andy Lynch100
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Posts by Andy Lynch

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Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
... The Cancer Research UK-funded Prostate International Cancer Genome Consortium (ICGC) project is led by Ros Eeles at the Institute of Cancer Research with further co-PIs and researchers located at sites around the UK and Finland including Cambridge, Norwich, Oxford, St Andrews and Tampere. It aims to ...
sequencing rnaseq smallrna cancer job methylation written 5 months ago by Andy Lynch100
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Job: PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
... [PhD Studentship with 3 year's UK/EU fees at the University of St Andrews for which Bioconductor experience is advantageous.] Further details here/here Approximately one in eight men will be diagnosed with prostate cancer (PCa) in his life, while a substantially higher proportion of men would show ...
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Job: PhD opportunity in St Andrews (Proteomic and Genomic analysis of Oesophageal Cancers)
... Analysis methods for the proteogenomics of oesophageal cancer. Poster: 04 SEPTEMBER 2017 [Closing date 1st October] We invite enquiries from qualified and highly motivated applicants for a 3 year PhD studentship comprising of tuition fees (Home/EU) and stipend. Background Oesophageal cancer is a ...
proteomics job cancer genomics written 14 months ago by Andy Lynch100
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Job: Job: Lecturer/Senior Lecturer/Reader in Statistics (including Computational Biology) at The University of St Andrews
... We are looking for outstanding statisticians to expand our research base in Statistics at the University of St Andrews. Applications are invited from candidates at Lecturer, Senior Lecturer and Reader levels. Salary:   Grade 7 - £39,324 - £48,327 per annum   Grade 8 - £49,772 - £55,998 per annum ...
jobs job written 16 months ago by Andy Lynch100
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Answer: A: Get the same gene for multiple Probe ID
... It is correct that you should get multiple probes for some genes, and Lluis is correct that in general some are meant to target specific single transcripts, some a subset of transcripts, and some probes intend to target all transcripts of a gene. In the case of AKT3, it looks as though there are alt ...
written 24 months ago by Andy Lynch100
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Answer: A: Error while running SomaticSignatures
... I think that  seqlevelsStyle(vr_new)<-"NCBI"  should allow you to use your first choice of reference genome. Best wishes, Andy ...
written 2.3 years ago by Andy Lynch100
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Comment: C: Error while running SomaticSignatures
... What does seqlevelsStyle(vr_new) report? Presumably something different to seqlevelsStyle(BSgenome.Hsapiens.1000genomes.hs37d5) ? ...
written 2.3 years ago by Andy Lynch100
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Answer: A: Annotation for Mouse Illumina Expression Chip V6.1.1
... Hi Smt8n, Those look to me to be ArrayAddressIDs that are in illuminaMousev1p1.db. An (inelegant) approach to extracting them would be: library("illuminaMousev1p1.db") library(DBI) fullanno<-illuminaMousev1p1fullReannotation() fullanno[fullanno$ArrayAddress %in% c(10243, 10280, 10575, 2004 ...
written 2.3 years ago by Andy Lynch100
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readVCFAsVRanges in VariantAnnotation broken by an FTZ format?
... I've noticed that the inclusion of a "##FORMAT=<ID=FTZ,Nu..." line in a vcf file seems to break the readVCFAsVRanges() function (although not the readVCF() function). CaVEMan, for example, includes such a line in its vcf files. Replacing all instances of FTZ with, e.g., FUZ in the vcf file avoids ...
variantannotation vcf readvcfasvranges written 2.3 years ago by Andy Lynch100 • updated 2.3 years ago by Michael Lawrence10k
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Job: Two Post-doctoral positions at the CRUK Cambridge Institute
... Applications are invited for two postdoctoral research associate positions to work with Professor Simon Tavaré FRS and other members of the Statistics and Computational Biology Laboratory at the Cancer Research UK Cambridge Institute in close collaboration with colleagues on two International Cancer ...
cancer job methylation rna-seq written 2.5 years ago by Andy Lynch100

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