User: skyoflcz

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skyoflcz10
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China
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3 years ago
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Posts by skyoflcz

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Comment: C: Confused in the usage of formula in DESeq or DESeq2
... By checking the results I think I now understand it.  It’s very kind of you to help me. Thank you very much! ...
written 3.1 years ago by skyoflcz10
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Comment: C: Confused in the usage of formula in DESeq or DESeq2
... I think I should update my statistic knowledge … "if a gene is DE in W, but not in M: (2) and (1)  if a gene is DE in M, but not in W: (3) and (1) if a gene is DE in W and M, but a different size of difference: (1), (2), (3) if a gene is DE in W and M, and the same size of difference: (2) and (3 ...
written 3.1 years ago by skyoflcz10
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Comment: C: Confused in the usage of formula in DESeq or DESeq2
... It is really kind of you. I’m sorry sometimes I might just have some misunderstandings in English. Could you possible help me to answer these three more questions? If a gene A was differential expression between WT and WU, and A also show differential between MT and MU, which result (result1, res ...
written 3.1 years ago by skyoflcz10
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Answer: A: Confused in the usage of formula in DESeq or DESeq2
... Sorry, I forgot the sessionInfo in my comment. >sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=Chinese (Simplified)_China.936  [2] LC_CTYPE=Chinese (Simplified)_China.936    [3] LC_MONETARY=Chinese (Simplified)_China.936 [4] LC_NUM ...
written 3.1 years ago by skyoflcz10
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Comment: C: Confused in the usage of formula in DESeq or DESeq2
... Thank you for your quick response and detailed instruction. Your kind answer really helps me a lot. I now try to make it with DESeq2. Could you possible help me to confirm my understanding? I hope it will not take you too much time. “ I'll assume W is the base level for genotype and U is the base ...
written 3.1 years ago by skyoflcz10
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Confused in the usage of formula in DESeq or DESeq2
... Hi Michael,   I’ve tried to apply DESeq in two sample comparison, and it works well. It is really great for the NGS data analysis.   Now I tried to analysis multiple groups. Though I checked the section about glm model and refer to limma package and look for some answers in BioC posts, I was sti ...
deseq deseq2 written 3.1 years ago by skyoflcz10 • updated 5 months ago by bio200160

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Popular Question 3.0 years ago, created a question with more than 1,000 views. For Confused in the usage of formula in DESeq or DESeq2

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