User: Mayte Suarez-Farinas

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Posts by Mayte Suarez-Farinas

<prev • 30 results • page 1 of 3 • next >
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Answer: A: Error with Rgraphviz
... Hi Seth, In fact that was the first thing we did when I got the error and it didn't work. Another hint ? I am working with: Rgraphviz Version: 1.5.10 GOstats: Version: 1.1.3 R.version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major ...
written 13.5 years ago by Mayte Suarez-Farinas300
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Error with Rgraphviz
... Hi! I got an error using GOstats vignete example. I am afraid is something related with my Rgraphviz but althought we reinstalled it, I continue to get the same error (see below). I will appreciate if somebody can advice me what to do. best regards, Mayte Errors... g1 <- oneGOGraph("GO:0003 ...
gostats written 13.5 years ago by Mayte Suarez-Farinas300 • updated 13.5 years ago by Seth Falcon7.4k
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Answer: A: GO Tools
... Hi Agnes, thanks for your reply. Here it is: goTools: 1.0.6 GO: 1.7.0 hgu133a: 1.7.0 On Mon, 9 May 2005, Paquet, Agnes wrote: > Dear Mayte, > > Could you please let me know which versions of goTools, GO and hgu133a > you are using so that I could try to reproduce the error? > > ...
written 13.5 years ago by Mayte Suarez-Farinas300
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GO Tools
... Hi. I was trying to use goTools library and I got the following error with with my data and with the example in the documentation. data(probeID) ontoCompare(affylist, probeType="hgu133a", plot=TRUE) [1] "Starting ontoCompare..." Error in get("GO:0003674", env = GOMFCHILDREN) : ...
gotools written 13.5 years ago by Mayte Suarez-Farinas300
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GO with mu11ksuba(b)
... Hi, I was trying to use the GO package with the mouse chips mu11ksuba and mu11ksubb. The following two functions: res<-getGO(probesids[1:100],'mu11ksuba') res<-unique(lookUp('GO:0006338','mu11ksuba',"GO2ALLPROBES")) gave the same error: Error in package_version(vers) : i ...
go hgu95av2 mu11ksuba cdf written 13.5 years ago by Mayte Suarez-Farinas300 • updated 13.5 years ago by Seth Falcon7.4k
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xy2i in SNps...
... Hi, I know it have been a lot of questions about the xy2i function in the mailing list, but I could not find my answer, so I am writting to ask your help. I am working with SNPs chips, speciffically, the 10K. I made the CDF packages and read the CEL files with ReadAffy function. While trying to r ...
cdf written 13.6 years ago by Mayte Suarez-Farinas300
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Reading STDEV in CEL files
... Hi! Is it posible to read not only the mean intensity but the STDEV from a cel files using functions from affy package ? Searching in the mailing list it seem that read.celfile could do it but I didnt find the function (I imagine that it was from an ancient version) Any hint will be very much appre ...
affy written 13.6 years ago by Mayte Suarez-Farinas300
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SNPs tool ???
... Hi I would like to know if there is any tool to work with affy SNPs chips. I have looked in the mail archives and it appears that some people were interested in it, so if somebody has any piece of code to share with me I would very very much appreciate it. If not, if somebody has created the cdfe ...
affy written 13.6 years ago by Mayte Suarez-Farinas300 • updated 13.6 years ago by James W. MacDonald48k
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Answer: A: (no subject)
... I am trying to update bioc packages and I got the following error: getBioC(develOK=TRUE,libName='annotation') Running getBioC version 1.2.65.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: www.bioconductor.org/getBioC.R Pl ...
written 14.1 years ago by Mayte Suarez-Farinas300
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mas5 and missing values
... Hi, I would like to use MAS5 in a batch of arrays where some probes are declared as missing but the function do not seems to accept missing values. Some sugestion ? Best -- Mayte Suarez Farinas The Rockefeller University 1230 York Avenue, Box 212 New York, NY 10021 phone: 1-212-327-8186 fax: 1-2 ...
written 14.2 years ago by Mayte Suarez-Farinas300

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