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Answer: A: should subgroups of comparisons be analyzed separately in Limma
6.5 years ago Gavin Kelly ▴ 680
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Answer: A: change plot title in DNAcopy multiple plot.type="s"
6.5 years ago Gavin Kelly ▴ 680
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25k
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Answer: A: Design model for DESeq2 analysis
6.5 years ago Gavin Kelly ▴ 680
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1.3k
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Answer: A: Loop for mass analyses and extraction of FCS data
6.6 years ago Gavin Kelly ▴ 680
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3.4k
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Answer: C: results(dds) error: couldn't find results. you should first run DESeq()
6.6 years ago Gavin Kelly ▴ 680
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872
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Answer: A: Is my design appropriate for contrast in DESeq2?
6.6 years ago Gavin Kelly ▴ 680
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1.9k
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Answer: A: What's the criteria used by DESeq2 to calculate log2 fold changes in time-course
6.6 years ago Gavin Kelly ▴ 680
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1.3k
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Answer: A: replicates and groups of samples: what's the right DESeq2 model?
6.6 years ago Gavin Kelly ▴ 680
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1.0k
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Answer: A: 2 cells x 2 media x 2 conditions
6.6 years ago Gavin Kelly ▴ 680
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1.3k
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Answer: A: Differential gene expression: common changes in response to treatment across cel
6.6 years ago Gavin Kelly ▴ 680
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2.0k
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Answer: A: DESeq2 experimental design
6.6 years ago Gavin Kelly ▴ 680
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3.7k
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Answer: A: DESeq2 contrast using list
6.6 years ago Gavin Kelly ▴ 680
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2.2k
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Answer: A: Help to understand my contrast.matrix and to interpret my topTable results
6.6 years ago Gavin Kelly ▴ 680
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2.6k
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Answer: A: ChIPseeker mapping between keys and columns
6.6 years ago Gavin Kelly ▴ 680
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3
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3.6k
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Answer: A: Time course analysis in DESeq2: handling common baseline for two experimental co
6.6 years ago Gavin Kelly ▴ 680
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5.1k
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Answer: A: About the results and contrast (DESeq2)
6.7 years ago Gavin Kelly ▴ 680
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1.2k
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Answer: A: DESeq2: Is it necessary to include all terms and interactions in LRT tests?
6.7 years ago Gavin Kelly ▴ 680
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4.0k
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Answer: A: deseq2 LRT vs Wald test results for DE expression among 4 conditions
6.7 years ago Gavin Kelly ▴ 680
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968
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Answer: A: DESeq2 with 4 groups, 5 timepoints and more...!
6.7 years ago Gavin Kelly ▴ 680
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1.4k
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Answer: A: DESeq2 multifactorialdesign contrasts
6.8 years ago Gavin Kelly ▴ 680
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1.2k
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Answer: A: Difference between DESeq2 1.14 and 1.16
6.8 years ago Gavin Kelly ▴ 680
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2.9k
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Answer: A: deseq2 complex time course data with out replicates
6.8 years ago Gavin Kelly ▴ 680
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Answer: A: [DESeq2] time-course Experimental design
6.8 years ago Gavin Kelly ▴ 680
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2.0k
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Answer: A: [DESeq2] time-course Experimental design
6.8 years ago Gavin Kelly ▴ 680
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9.1k
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Answer: A: DESeq2 resultsNames(dds) not giving the right comparisons...but results(dds, con
6.8 years ago Gavin Kelly ▴ 680
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2.5k
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Answer: A: DESeq2 using interaction terms or grouping variable
6.8 years ago Gavin Kelly ▴ 680
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1.8k
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Answer: A: DESeq2 time series tissue specific differences over time
6.9 years ago Gavin Kelly ▴ 680
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4.4k
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Answer: A: Multiple comparisons for DE analysis with DESeq2
7.0 years ago Gavin Kelly ▴ 680
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0
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1.0k
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Answer: A: How to solve out the misunstanding of fake "red" "green" on the heatmap
7.0 years ago Gavin Kelly ▴ 680
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1
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2.3k
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Answer: A: LIMMA paired analysis adjusting for two continuous variables - microarray data
7.2 years ago Gavin Kelly ▴ 680
6
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9.3k
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Answer: A: extracting the genes associated with the clusters
7.2 years ago Gavin Kelly ▴ 680
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1.2k
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Answer: A: Issues about experiment design
7.2 years ago Gavin Kelly ▴ 680
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2.6k
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Answer: A: Timecourse Differential expression with multiple factors
7.2 years ago Gavin Kelly ▴ 680
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24k
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Answer: A: DESeq2 design confusion with three factors
7.2 years ago Gavin Kelly ▴ 680
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1.9k
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Answer: A: DESeq pvalue & padj
7.2 years ago Gavin Kelly ▴ 680
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4.8k
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Answer: A: DESeq2 log fold change estimates for factors with many levels
7.2 years ago Gavin Kelly ▴ 680
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2.0k
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Answer: A: DESeq2 with contaminating cell types
7.3 years ago Gavin Kelly ▴ 680
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968
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Answer: A: DE by DEseq2
7.3 years ago Gavin Kelly ▴ 680
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2.0k
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Answer: A: DESeq2 analysis with a continuous covariate
7.3 years ago Gavin Kelly ▴ 680
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2.1k
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Answer: A: DESeq2: Multivariate Models and Model Statistic
7.4 years ago Gavin Kelly ▴ 680
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1.3k
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Answer: A: DESeq2 comparing interaction terms between multiple genotypes
7.4 years ago Gavin Kelly ▴ 680
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0
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959
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Answer: A: Differential expression of one group agains all samples
7.6 years ago Gavin Kelly ▴ 680
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4.4k
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Answer: A: DESeq2 3-fatcor design and different interaction terms
7.8 years ago Gavin Kelly ▴ 680
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1
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1.3k
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Answer: A: What is the correct contrast matrix if one treatment must be compared to both of
7.8 years ago Gavin Kelly ▴ 680
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