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Comment: C: How to compare the design formulas of DESeq2?
6.4 years ago Gavin Kelly ▴ 680
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Comment: C: Running DESeq2 with gene-dependent binary variable such as membership in pathway
6.4 years ago Gavin Kelly ▴ 680
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5.7k
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Comment: C: lfcShrink and factors with multiple levels
6.5 years ago Gavin Kelly ▴ 680
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25k
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Comment: C: Design model for DESeq2 analysis
6.5 years ago Gavin Kelly ▴ 680
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4.2k
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Comment: C: DESEq2 for mulitple tissues under 2 conditions
6.5 years ago Gavin Kelly ▴ 680
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1.8k
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Comment: C: SC3 gene clusters
6.5 years ago Gavin Kelly ▴ 680
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Comment: C: DEseq2: any problem with unbalanced number of sample in normal/tumor study?
6.5 years ago Gavin Kelly ▴ 680
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1.1k
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Comment: C: DeSeq2- design experiment
6.5 years ago Gavin Kelly ▴ 680
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1.1k
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Comment: C: DeSeq2- design experiment
6.5 years ago Gavin Kelly ▴ 680
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1.0k
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Comment: C: 2 cells x 2 media x 2 conditions
6.5 years ago Gavin Kelly ▴ 680
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2.0k
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Comment: C: DESeq2 experimental design
6.5 years ago Gavin Kelly ▴ 680
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1.8k
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Comment: C: Error when restore rownames of Feature data of ExpressionSet
6.6 years ago Gavin Kelly ▴ 680
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2
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1.8k
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Comment: C: Error when restore rownames of Feature data of ExpressionSet
6.6 years ago Gavin Kelly ▴ 680
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2
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1.8k
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Comment: C: Error when restore rownames of Feature data of ExpressionSet
6.6 years ago Gavin Kelly ▴ 680
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1
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3.6k
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Comment: C: Time course analysis in DESeq2: handling common baseline for two experimental co
6.6 years ago Gavin Kelly ▴ 680
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20k
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Comment: C: Adjusting for covariates in paired sample design DESeq2
6.6 years ago Gavin Kelly ▴ 680
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1.7k
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Comment: C: Differential expression of nomalised and log2 transformed data in limma
6.6 years ago Gavin Kelly ▴ 680
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1
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5.1k
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Comment: C: About the results and contrast (DESeq2)
6.6 years ago Gavin Kelly ▴ 680
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9.0k
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Comment: C: DESeq2 resultsNames(dds) not giving the right comparisons?.
6.8 years ago Gavin Kelly ▴ 680
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1.8k
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Comment: C: DESeq2 time series tissue specific differences over time
6.8 years ago Gavin Kelly ▴ 680
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1
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2.5k
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Comment: C: Inverse logFC on DESeq2 Rstudio
6.9 years ago Gavin Kelly ▴ 680
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872
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Comment: C: DESeq2 on 2 genotypes versus 1 control
6.9 years ago Gavin Kelly ▴ 680
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1
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4.4k
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Comment: C: How to use subSeq with DNAStringSet and information of GroupedIRanges?
6.9 years ago Gavin Kelly ▴ 680
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1
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2.2k
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Comment: C: DESeq2 model design with unequal number of time points
7.1 years ago Gavin Kelly ▴ 680
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3.6k
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Comment: C: strange results from differential methylation analysis using limma
7.1 years ago Gavin Kelly ▴ 680
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1
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2.7k
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Comment: C: DESEq2 Paired samples: Baseline Versus each Timepoint
7.1 years ago Gavin Kelly ▴ 680
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2.3k
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Comment: C: LIMMA paired analysis adjusting for two continuous variables - microarray data
7.1 years ago Gavin Kelly ▴ 680
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896
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Comment: C: Student at SJTU
7.2 years ago Gavin Kelly ▴ 680
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1.5k
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Comment: C: Question regarding best bioconductor package for RNA-seq
7.2 years ago Gavin Kelly ▴ 680
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1
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1.5k
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Comment: C: Multi-factorial design for patient-replicates from different time points (Deseq2
7.2 years ago Gavin Kelly ▴ 680
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1
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23k
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Comment: C: DESeq2 design confusion with three factors
7.2 years ago Gavin Kelly ▴ 680
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2
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1.2k
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Comment: C: high number of DEGs detected using EBSeq-HMM *****UPDATED
7.2 years ago Gavin Kelly ▴ 680
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1
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1.2k
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Comment: C: high number of DEGs detected using EBSeq-HMM *****UPDATED
7.2 years ago Gavin Kelly ▴ 680
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4.8k
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Comment: C: DESeq2 log fold change estimates for factors with many levels
7.2 years ago Gavin Kelly ▴ 680
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2
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1.7k
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Comment: C: Volcano plot non-numeric argument error
7.2 years ago Gavin Kelly ▴ 680
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1
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1.7k
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Comment: C: Volcano plot non-numeric argument error
7.2 years ago Gavin Kelly ▴ 680
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1
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1.7k
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Comment: C: Volcano plot non-numeric argument error
7.2 years ago Gavin Kelly ▴ 680
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1
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1.7k
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Comment: C: Volcano plot non-numeric argument error
7.2 years ago Gavin Kelly ▴ 680
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1.1k
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Comment: C: DESeq2 - differentially expressed genes for each sample
7.2 years ago Gavin Kelly ▴ 680
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1
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2.0k
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Comment: C: DESeq2 with contaminating cell types
7.3 years ago Gavin Kelly ▴ 680
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960
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Comment: C: DE by DEseq2
7.3 years ago Gavin Kelly ▴ 680
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1
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960
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Comment: C: DE by DEseq2
7.3 years ago Gavin Kelly ▴ 680
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1
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4.1k
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Comment: C: Any way to proceed duplicate removal for list of GRanges object ?
7.3 years ago Gavin Kelly ▴ 680
1
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0
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3.1k
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Comment: C: Simultaneously adding two different covariates in the model gives error in DESeq
7.3 years ago Gavin Kelly ▴ 680
0
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1
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2.6k
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Comment: C: GLM model on time course analysis and removing the outliers in Deseq2
7.3 years ago Gavin Kelly ▴ 680
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1
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2.6k
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Comment: C: GLM model on time course analysis and removing the outliers
7.3 years ago Gavin Kelly ▴ 680
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2.8k
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Comment: C: DESEQ2: Can we analyse pair of technical replicates as biological replicates to
7.5 years ago Gavin Kelly ▴ 680
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0
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1.9k
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Comment: C: DESeq2: Shrinkage is inverting fold-changes
7.8 years ago Gavin Kelly ▴ 680
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1
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1.4k
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Comment: C: Limma; design matrix for treatments and sibship
8.5 years ago Gavin Kelly ▴ 680
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1
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9.0k
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Comment: C: Confused in the usage of formula in DESeq or DESeq2
9.5 years ago Gavin Kelly ▴ 680
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