User: shidaxia

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shidaxia0
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Posts by shidaxia

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Comment: C: problem with getSRAfile in SRAdb
... Hi Jack and Sean, Just re-visit this problem. With newer R and SRAdb package, everything is fine now. Have no idea what happened. :-( Tao > getSRAfile( in_acc = c("SRR000648","SRR000657"), sra_con = sra_con, destDir = getwd(), fileType = 'sra' ) Files are saved to: 'C:/Users/ts ...
written 7 months ago by shidaxia0
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Comment: C: trouble with installing "affyio"
... Thank you very much, Martin! You're right about this. After sudo apt-get install zlib1g-dev And re-run the installation script. It worked! Similar error occurred when I was trying to install `XVector` package. This solved both problems. Tao ...
written 7 months ago by shidaxia0
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trouble with installing "affyio"
... Hi list, I was trying to install GEOsubmission and got the following error message, which was caused during the installation of a required package: affyio.  Another piece of information is that I was trying do this inside a "rocker/rstudio:3.5.0" docker image.  Not sure if that has anything to do w ...
affyio rstudio docker r 3.5.0 written 10 months ago by shidaxia0
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problem with getSRAfile in SRAdb
... Hi, Try to run the code in SRAdb vignette.  It seems getSRAfile only downloads a portion of .sra files (the actual file size for these two files are 280 and 422kB.  I've tried other files and the problem is still there. Thanks! Tao   > getSRAfile( c("SRR000648","SRR000657"), sra_con, fileTyp ...
sradb written 22 months ago by shidaxia0 • updated 22 months ago by Jack Zhu170

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