User: Maciej Jończyk
Maciej Jończyk • 0
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Posts by Maciej Jończyk
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... HI,
for me it seems that `getDiffExpression` complains about wrong data type. And indeed, you have negative raw read counts, moreover with strangely added text string eg "-295,filename5_peak_17638 "
I think you should check your bam files, it must strictly meet Homer expectations to be parsed pro ...
written 20 months ago by
Maciej Jończyk • 0
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... I have the same problem.
I have used biomaRt to access gramene data in the past using the default server. Now I'm not able to use it, here is the code:
> listMarts()
Space required after the Public Identifier
SystemLiteral " or ' expected
SYSTEM or PUBLIC, the URI is missing
Opening and endi ...
written 3.3 years ago by
Maciej Jończyk • 0
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... Or for plants:
>listMarts(host="www.gramene.org")
...
written 3.3 years ago by
Maciej Jończyk • 0
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... Hi All,
I'm trying to optimize Streptococcus pyrogenes cas9 sequence (ca. 4000nt) for expression in maize.
GeneGA package seems optimal (command GeneGA, optimalizing both codon bias and mRNA secondary structure) but it has poor documentation. I've created custom CAI table. After ca. four days of a ...
written 4.4 years ago by
Maciej Jończyk • 0
• updated
4.3 years ago by
tomas.bjorklund • 20
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