User: jz6002

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jz60020
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Posts by jz6002

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Comment: C: Question about the database version and MAF value in biomaRt
... Hi, Thomas: Is this link the latest version of hg19? I tried to get the MAF of SNP rs4829390 from your website. It gave me NA. But I checked dbSNP, the MAF should be 0.3796. Do you have a link of the latest version  using hg19? Thank you. ...
written 3.9 years ago by jz60020
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Comment: C: Question about the database version and MAF value in biomaRt
... Thanks. It works. ...
written 3.9 years ago by jz60020
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Question about the database version and MAF value in biomaRt
... Hi,  I am trying to get the MAF values for the variants in my VCF file in R by biomaRt. Because the reference file I used to generated the VCF file is HG19. So I cannot use the latest version of the ensembl DB. I checked the  Ensembl DB web site and find out the latest version for HG19 (GRCh37) is ...
biomart R maf written 3.9 years ago by jz60020 • updated 3.9 years ago by Thomas Maurel770
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cannot connect to REACTOME database in R
... I tired to access the REACTOME database by the following R code which I always did as following: library("biomaRt") reactome=useMart("REACTOME") pathway=useDataset("pathway",mart=reactome) I got the error MSG as following: Error in useDataset("pathway", mart = reactome) : The given dataset: ...
biomart reactome written 4.6 years ago by jz60020 • updated 4.6 years ago by Steffen Durinck90

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