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2.3k
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Answer: A: Can XCMS output continuum/profile data to netCDF format?
7.4 years ago Johannes Rainer ★ 2.0k
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0
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1.6k
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Answer: A: xcms and xcmsSet no longer works on my Mac
7.5 years ago Johannes Rainer ★ 2.0k
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0
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788
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Answer: A: warning message from makeTxDbFromGFF in GenomicFeatures package
7.5 years ago Johannes Rainer ★ 2.0k
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0
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1.1k
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Answer: A: get LCMS masses with more significant figures
7.5 years ago Johannes Rainer ★ 2.0k
2
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2
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1.9k
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Answer: A: How to extract only mRNA from TxDb object?
7.5 years ago Johannes Rainer ★ 2.0k
1
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2
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1.7k
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Answer: A: How to plot transcript biotype annotation into GVIZ?
7.6 years ago Johannes Rainer ★ 2.0k
2
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0
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646
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Answer: A: biomaRt not working for M. musculus but works for H. sapiens
7.7 years ago Johannes Rainer ★ 2.0k
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0
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1.6k
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Answer: A: Gviz and gene annotation tracks (error on a chromosome level Tracklist)
7.7 years ago Johannes Rainer ★ 2.0k
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0
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1.9k
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Answer: A: Gviz - adding ensembl gene annotation track
7.7 years ago Johannes Rainer ★ 2.0k
2
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0
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1.8k
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Answer: A: Missing SYMBOL keytype in EnsDb.Hsapiens.v75
7.8 years ago Johannes Rainer ★ 2.0k
1
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0
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969
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Answer: A: select With Regular Expression
7.9 years ago Johannes Rainer ★ 2.0k
0
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1
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1.8k
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Answer: A: Generating database with non model species to be use by ReportingTools
7.9 years ago Johannes Rainer ★ 2.0k
1
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0
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1.8k
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Answer: A: Gviz for Rnor_6
7.9 years ago Johannes Rainer ★ 2.0k
1
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1
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2.3k
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Answer: A: ensembldb: ensDbFromGtf error with ensembl version 74
8.0 years ago Johannes Rainer ★ 2.0k
0
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1
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2.7k
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Answer: A: Help Error could not find function xcmsSet
8.0 years ago Johannes Rainer ★ 2.0k
1
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0
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1.2k
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Answer: A: goseq package: Is the package in sync with the most current Ensembl release?
8.1 years ago Johannes Rainer ★ 2.0k
1
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3
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3.5k
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Answer: A: GenomicFeatures: Select exons by transcript. Any faster option than exonsBy?
8.1 years ago Johannes Rainer ★ 2.0k
0
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3
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4.8k
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Answer: A: error making txdb object from gtf file
8.3 years ago Johannes Rainer ★ 2.0k
0
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0
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1.9k
views
Answer: A: Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
8.5 years ago Johannes Rainer ★ 2.0k
1
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0
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3.2k
views
Answer: A: biomaRt package problem
8.5 years ago Johannes Rainer ★ 2.0k
1
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1
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9.0k
views
Answer: A: Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
8.5 years ago Johannes Rainer ★ 2.0k
4
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2
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5.4k
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Answer: A: BiomaRt workaround when Biomart server closed
8.5 years ago Johannes Rainer ★ 2.0k
5
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1
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5.5k
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Answer: A: biomaRt no longer works with proxy after upgrade
8.5 years ago Johannes Rainer ★ 2.0k
1
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1
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1.5k
views
Answer: A: biomaRt error when creating a mart object
8.5 years ago Johannes Rainer ★ 2.0k
5
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1
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13k
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Answer: A: makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
8.5 years ago Johannes Rainer ★ 2.0k
4
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1
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13k
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Answer: A: Problem with biomart's listMarts function
8.5 years ago Johannes Rainer ★ 2.0k
2
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0
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6.3k
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Answer: A: annotating gene for transcript type/biotype
8.5 years ago Johannes Rainer ★ 2.0k
0
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0
replies
2.4k
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Answer: A: biomaRt fails for M.musculus annotation, Ensembl version 80
8.7 years ago Johannes Rainer ★ 2.0k
1
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0
replies
1.1k
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Answer: A: Using Ensmbl rel 80, when rel 79 is supported by BioConductor
8.8 years ago Johannes Rainer ★ 2.0k
0
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0
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1.4k
views
Answer: A: get LCMS masses with more significant figures with xcmsRaw()
8.8 years ago Johannes Rainer ★ 2.0k
0
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0
replies
1.8k
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Answer: A: summarizeOverlaps with mapq filter?
8.9 years ago Johannes Rainer ★ 2.0k
0
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0
replies
2.0k
views
Answer: A: Graph viewer for Reactome Pathways
8.9 years ago Johannes Rainer ★ 2.0k
0
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0
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2.4k
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Answer: A: Difference between methods getEIC and rawEIC for xcmsRaw classes
9.0 years ago Johannes Rainer ★ 2.0k
0
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0
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1.3k
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Answer: A: Unable to set colors in plotrt function in xcms package
9.1 years ago Johannes Rainer ★ 2.0k
1
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1
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4.3k
views
Answer: A: miRNA microarray analysis
9.1 years ago Johannes Rainer ★ 2.0k
0
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0
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2.0k
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Answer: A: Does BSgenome.Dmelanogaster.UCSC.dm2 maintain non-coding RNAs?
9.1 years ago Johannes Rainer ★ 2.0k
1
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1
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4.3k
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Answer: A: Getting a list of all tRNA encoding genes for an organism?
9.1 years ago Johannes Rainer ★ 2.0k
2
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1
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3.5k
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Answer: A: Filtering on present/absent calls methodology and perfect match only arrays
9.2 years ago Johannes Rainer ★ 2.0k
0
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0
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3.1k
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Answer: A: AffyMetrix CEL file; data is already transformed too log2
9.2 years ago Johannes Rainer ★ 2.0k
0
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0
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4.1k
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Answer: A: Rsubreads - featureCount - gtf - error
9.3 years ago Johannes Rainer ★ 2.0k
1
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1
reply
2.4k
views
Answer: A: Error installing Biobase on R 3.1.2
9.3 years ago Johannes Rainer ★ 2.0k
1
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1
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1.6k
views
Answer: A: Binning expression data along with capturing gene identifiers
9.3 years ago Johannes Rainer ★ 2.0k
0
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1
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2.3k
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Answer: A: scanBam on BamSampler supposed to be fast?
9.3 years ago Johannes Rainer ★ 2.0k
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