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Posts by am26
... Thanks very much for the response. The genome.fa file I used to generate the STAR index was GRCh37 downloaded from NCBI which should be the same as hg19 shouldn't it? Currently I'm tied to this file as it's used by the group I am working in. When I try to import the STAR Chimeric.out.junction file ...
... Hi there, I'm comparing software for the detection of fusion genes; star, tophat-fusion and defuse. I've read about the Bioconductor chimera package which would be a convenient way of evaluating the software on an equal footing as the outputs of each tool can be imported into and analysed by the c ...
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