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User: boris.steipe

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Posts by boris.steipe

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Answer: A: Error in getBM of biomaRt package
... I saw the same error yesterday - it went away this morning. There was no note of an outage on the blog, but it looks like that's what it was. ...
written 22 months ago by boris.steipe0
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pairwiseAlignment() - Similarity NA% ?
... pairwiseAlignment() returns NA values for similarity length and similarity %: MWE: p1 <- AAString(in2seq("VDVYEFIHSTGSIMKRKKDDWVNATHILK")) q1 <- AAString(in2seq("IPVFEYPLNGQYIMIDCETGMVHFTGIWK")) ali <- pairwiseAlignment(p1, q1, substitutionMatrix = "BLOSUM62", ...
biostrings pairwisealignment written 3.4 years ago by boris.steipe0 • updated 3.3 years ago by Hervé Pagès ♦♦ 13k
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Answer: A: can't run functions in 'annotate'
... .... Nevermind forgot to do library(annotate)   Apologies for the noise. B. ...
written 4.2 years ago by boris.steipe0
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can't run functions in 'annotate'
... I have just upgraded bioconductor to 3.0 and installed 'annotate' (it came from: http://bioconductor.org/packages/3.0/bioc/bin/macosx/mavericks/contrib/3.1/annotate_1.44.0.tgz).   Installation concluded without error. However: ?blastSequences No documentation for ‘blastSequences’ in specified pac ...
annotate written 4.2 years ago by boris.steipe0

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