User: sylvian

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sylvian0
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Posts by sylvian

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Comment: C: readCtData() in HTqPCR with matrix of multiple samples
... > head(temp)        sample 1 sample 2 sample 3 sample 4 sample 5 sample 6 sample 7 sample 8 gene 1       30       33       37       35       33       25       23       33 gene 2       25       30       20       17       38       24       26       34 gene 3       17       34       12       35      ...
written 3.1 years ago by sylvian0
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Comment: C: readCtData() in HTqPCR with matrix of multiple samples
... > sessionInfo() R version 3.3.0 (2016-05-03) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Server release 6.6 (Santiago) locale:  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8  [5] LC_MONETARY=en_US.UTF-8    LC ...
written 3.1 years ago by sylvian0
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Comment: C: readCtData() in HTqPCR with matrix of multiple samples
... I'm having the same issue, and the example with pseudo data does (same for my own data) not work for me: # Making pesudo-data, just to illustrate the example temp <- matrix(sample(12:40, size=27*381, replace=TRUE), ncol=27) rownames(temp) <- paste("gene", 1:381) colnames(temp) <- paste("sa ...
written 3.1 years ago by sylvian0
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Answer: A: easyRNASeq error: Error in aggregate.data.frame(as.data.frame(x), ...) : no ro
... I even now re-headered all my bam files from the original sam - still the same problem :/       ...
written 5.0 years ago by sylvian0
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easyRNASeq error: Error in aggregate.data.frame(as.data.frame(x), ...) : no rows to aggregate
... Hi,   I've just easyRNAseq before a couple of months ago without problems.   Now I get the following error: Error in aggregate.data.frame(as.data.frame(x), ...) :   no rows to aggregate Why???? I've already checked that the chromosome sizes of my alignment genome are identical to the BSgenom ...
easyrnaseq written 5.0 years ago by sylvian0

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