User: schasse

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schasse0
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Posts by schasse

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Answer: A: RnBeads: Error in as.list.default(data.source) : no method for coercing this S4
... So much for the elegant solution.   I have solved this by removing the subjects' from the Sample Annotation files, then deleting the corresponding .idat data files from the data source folders and launching the jobs as previously. R seems to be happily running now, but I get no points for a brute ...
written 4.0 years ago by schasse0
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RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
... Previously I have successfully analyzed this data set using RnBeads. I have been asked to return to my dataset and remove two subjects'  data from the analysis. I have followed the directions closely to affect this modification and resubmitted the job. But it repeatedly failed (see below).  So, I ...
error s4vectors as.vector(data) s4 rnbeads written 4.0 years ago by schasse0
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Comment: C: package 'ChAMP' demo/test code fails at champ.CNA()
... Thank you so much! -Scott- ________________________________ From: Dan Tenenbaum [bioc] [noreply@bioconductor.org] Sent: Friday, March 06, 2015 4:32 PM To: Chasse, Scott A Subject: [bioc] C: package 'ChAMP' demo/test code fails at champ.CNA() Activity on a post you are following on support.biocondu ...
written 4.5 years ago by schasse0
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Answer: A: package 'ChAMP' demo/test code fails at champ.CNA()
... I'v run into the same exact situation. I haven't been able to sort this out. I have actual data sets that run as well but they fail differently and at different steps in the pipeline. I'm beginning to suspect that the install is faulty. Let me know if you've solved the problem. Thanks. -Scott Chas ...
written 4.5 years ago by schasse0
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ChAMP bailing before analysis complete
... I am running  R version 3.1.2 and launched champ.process() using the default command in the documentation as a first attempt. All the proper .cvs and iDat files are presumably in the home folder. The command is accepted, the output folder is created, and the two .cvs files are read in when all of a ...
champ written 4.7 years ago by schasse0

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