User: Peter.Wood

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Peter.Wood0
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Posts by Peter.Wood

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Comment: C: Larger values masking others for OmicCircos heatmap
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written 2.9 years ago by Peter.Wood0
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Larger values masking others for OmicCircos heatmap
... I am wondering whether the heatmap scale for the circos plot can be specified to each gene. At the moment the  highly expressed genes are masking the others so that differential expression patterns for each experiment group are not being shown.  circos(R=110, cir=db, W=200, mapping=gene.expressio ...
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Making a circos plot to show expression for a gene set rather than whole genome
... Hello, I am a new user to the OmicCircos package and the R code. For a little while I have been trying to create a circos plot to show the expression of a gene set. However, after constructing data frames with gene names and segment sizes, the segAnglePo and sim.circos functions consistently revert ...
gene set analysis omiccircos gene set written 2.9 years ago by Peter.Wood0 • updated 3 months ago by yifangt10
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Using segAnglePo() for a set of genes
... Can someone please describe how to form the circle size, number of segments and segment width for a Circos plot when using a subset of genes, rather than hg19/18 as an anchor. Thanks. ...
geneexpression genesetenrichment seganglepo written 2.9 years ago by Peter.Wood0

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Popular Question 2.9 years ago, created a question with more than 1,000 views. For Making a circos plot to show expression for a gene set rather than whole genome

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