User: gavrielmatt

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Posts by gavrielmatt

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ChIPQC Error in names(res) <- nms
... Hello, I am trying to run ChIPQC on 3 experimental samples and 1 control sample. When I run ChIPQC I get an error message when ChIPQC tries to analyze the 3rd scaffold. Here is the ChIPQC command I ran and the corresponding output. > Experiment_ChIPQC <- ChIPQC(ExperimentTable, chromosomes ...
chipqc written 9 months ago by gavrielmatt0
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Answer: A: How does DESeq2 handle zero counts in one condition?
... Ah. It's because you included the period and parantheses in the hyperlink. ...
written 4.4 years ago by gavrielmatt0
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Answer: A: How does DESeq2 handle zero counts in one condition?
... Thank you for the explanation Michael. The link you posted is dead, but I assume you mean this paper? Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15(12), 550. doi:10.1186/s13059-014-0550-8 ...
written 4.4 years ago by gavrielmatt0
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How does DESeq2 handle zero counts in one condition?
... I asked this question on SeqAnswers. Does anyone know how DESeq2 handles genes that have zero counts in one condition and >0 counts in another? My results output shows that these genes have a positive log2 fold-change value, but I do not understand how DESeq2 arrives at this number if it is tak ...
deseq deseq2 rna-seq written 4.4 years ago by gavrielmatt0

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Popular Question 4.3 years ago, created a question with more than 1,000 views. For How does DESeq2 handle zero counts in one condition?

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