User: Lluís R

gravatar for Lluís R
Lluís R370
Reputation:
370
Status:
Trusted
Location:
European Union
Last seen:
48 minutes ago
Joined:
3 years, 8 months ago
Email:
l************@gmail.com

I am the author and maintainer of the BioCor package

Posts by Lluís R

<prev • 196 results • page 1 of 20 • next >
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Comment: C: WGCNA Co-expression network analysis on cuffdiff output
... How many samples do you have? ...
written 3 days ago by Lluís R370
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Comment: C: time series, block by patient, between and within comparisons limma-voom
... For question a) Do you want the answer irrespective of the group or not? (for me the only one that makes sense is the 3rd option. because then you can make the contrasts to answer any question you might have.   ...
written 7 days ago by Lluís R370
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Comment: C: time series, block by patient, between and within comparisons limma-voom
... How many samples do you have in total? If I understand the question it seems that you have three patients for each time points which would be then divided into the 2 types of patients you have. Or it is something helse ...
written 7 days ago by Lluís R370
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Comment: C: Segfault error when loading WGCNA
... I would recommend to use the latest R version (and the latest WGCNA version). This seems to be from a problem in the C++ code of WGCNA ...
written 16 days ago by Lluís R370
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Error setting up a sample in OSAT
... I try to use the setup.sample that worked in the examples but I have found an error library("OSAT") pheno <- structure(list(`Sample Name_RNA` = c("001-w000", "001-w014"), IBD = c("CD", "CD")), row.names = 1:2, class = "data.frame") gs <- setup.sample(pheno[1:2, c("Sample Name_RNA", "IBD")], ...
osat written 8 weeks ago by Lluís R370
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Comment: C: topGO enrichment analysis
... topGO requires a list of genes and the p-values associated with these genes. But you need to create the topGOdata object in order to be able to use the test ...
written 10 weeks ago by Lluís R370
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Comment: C: topGO: how to rettrieve (long) GO term description without abbreviating
... I haven't been using topGO for a while, but I think it could output the whole term name, but maybe it is not displayed (or I could be wrong). ...
written 10 weeks ago by Lluís R370
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Comment: C: topGO: how to rettrieve (long) GO term description without abbreviating
... Perhaps you can use a workaround looking into the GO.db package for the terms of these ids.   ...
written 11 weeks ago by Lluís R370
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Comment: C: pathview: Warning: Download of hsa04110 xml and png files failed!
... This is not the latest version of R nor of Biocondutor, for these reason I would recommend you to upgrade your R and Bioconductor versions and check in the new version if the error persist. ...
written 11 weeks ago by Lluís R370
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Answer: A: TopGO ks test using a score different from p-value
... Theoretically yes, you could use it, you would need to change the selectFun argument, and provide a function that selects the desired genes. However, I think you won't be able to do it because, what I recall when I tried, the selectFun hadn't changed (it is x < 0.05) and it didn't select any gen ...
written 11 weeks ago by Lluís R370

Latest awards to Lluís R

Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Where can I use the VSN source code in C++?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Scholar 14 months ago, created an answer that has been accepted. For A: Does anyone need to install an R package which is used by another package as imp
Scholar 14 months ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Scholar 15 months ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Voter 15 months ago, voted more than 100 times.
Centurion 17 months ago, created 100 posts.
Supporter 3.7 years ago, voted at least 25 times.
Scholar 3.7 years ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?

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