User: Lluís Revilla Sancho

Reputation:
450
Status:
Trusted
Location:
European Union
Website:
https://b101nfo.blogsp...
Twitter:
Lluis_Rev
Last seen:
15 hours ago
Joined:
4 years ago
Email:
l************@gmail.com

I am the author and maintainer of the BioCor package

Posts by Lluís Revilla Sancho

<prev • 219 results • page 1 of 22 • next >
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Answer: C: Error in Champ for Bioconductor performing GSEA analysis on Methlayion array dat
... Install the package: "IlluminaHumanMethylationEPICanno.ilm10b**4**.hg19" and see if it happens again ...
written 5 days ago by Lluís Revilla Sancho450
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Comment: C: How can I compare the expression of two genes within the same sample?
... You can use the cqn normalization that takes into account the gene length. ...
written 20 days ago by Lluís Revilla Sancho450
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Comment: C: WGCNA: cleaning for sample outliers
... 1. Yes, the threshold is to remove samples that are "outliers", that too few follow the same pattern to be reliable 2.Each label is a group of samples, so there are two other groups (besides group 1) that behave differently ...
written 20 days ago by Lluís Revilla Sancho450
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Comment: C: Best Practices for Speeding Up/Optimizing EBIMage
... Did you read the help page of [Robust and Efficient Code](https://bioconductor.org/developers/how-to/efficient-code/) and followed its recommendations? (Mainly use vectorized functions) Could you show a profiling of the code to see where are the bottlnecks of your performance? ...
written 21 days ago by Lluís Revilla Sancho450
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Comment: C: Is S4Vectors not able to install in R-3.5.1?
... I could install it without error. Maybe it is related to 32/64 bytes difference or to an invalid version of Bioconductor (Try `BiocManager::valid()`) ...
written 5 weeks ago by Lluís Revilla Sancho450
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Comment: C: metagenomeSeq error question: error on creation of newMRexperiment
... Have you checked that taxa is of the right dimensions and with the same row names as in `counts$counts`? ...
written 5 weeks ago by Lluís Revilla Sancho450
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Comment: C: topGO: GO terms in gene annotation do not match significant GO term output
... Could it be that these genes are child terms of the GO term of your interest? I don't remember the  code nor the documentation... ...
written 8 weeks ago by Lluís Revilla Sancho450
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Comment: C: STRINGdb: enrichment function raises error
... Have you tried the latest version of R and the package to see if this problem is solved on the newest version? Also, could you add the traceback() call to see where does this error originate? ...
written 8 weeks ago by Lluís Revilla Sancho450
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Comment: C: [DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
... Yes, the development of the packages are currently developed and checked with what will become R 3.6, as they will be released when R 3.6 will be released too. ...
written 9 weeks ago by Lluís Revilla Sancho450
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Comment: C: Error installing graphite
... Many thanks Gabriele! The fix worked in my machine too and I could install other packages that depend on graphite. I hope it wasn't hard to traceback. Many thanks for fixing it. ...
written 9 weeks ago by Lluís Revilla Sancho450

Latest awards to Lluís Revilla Sancho

Popular Question 7 weeks ago, created a question with more than 1,000 views. For Unable to calculate in parallel what can be calculated on a for loop
Popular Question 3 months ago, created a question with more than 1,000 views. For Unable to calculate in parallel what can be calculated on a for loop
Scholar 3 months ago, created an answer that has been accepted. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Where can I use the VSN source code in C++?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Scholar 19 months ago, created an answer that has been accepted. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Scholar 19 months ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Scholar 19 months ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Voter 20 months ago, voted more than 100 times.
Centurion 22 months ago, created 100 posts.
Supporter 4.0 years ago, voted at least 25 times.
Scholar 4.0 years ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?

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