User: Lluís Revilla Sancho

Reputation:
460
Status:
Trusted
Location:
European Union
Website:
https://b101nfo.blogsp...
Twitter:
Lluis_Rev
Last seen:
2 hours ago
Joined:
4 years, 2 months ago
Email:
l************@gmail.com

I am the author and maintainer of the BioCor package

Posts by Lluís Revilla Sancho

<prev • 225 results • page 1 of 23 • next >
0
votes
1
answer
56
views
1
answers
Comment: C: Trouble installing GOSemSim
... did you try updating S4Vectors package? The problem seems to be a change on that package that it is needed by GOSemSim ...
written 23 hours ago by Lluís Revilla Sancho460
0
votes
1
answer
62
views
1
answers
Comment: C: Correlate WGCNA modules from 2 separate analyses (small and large RNA)
... At most you can say (if they are on the same samples) that a module on small RNA behaves similar or opposed as a module in long RNA ...
written 14 days ago by Lluís Revilla Sancho460
0
votes
1
answer
106
views
1
answers
Comment: C: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
... I was just answering how to obtain the "names" of the genes as it is your question, but your last comment is in another direction. That's why my comment doesn't help you with your plotting problems. After obtaining the "names" of the genes you can replace the internal data of the object to be used b ...
written 15 days ago by Lluís Revilla Sancho460
0
votes
1
answer
106
views
1
answers
Comment: C: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
... You can always run the "non readable" test and then map the ids back to COMMON or GENENAME, this doesn't require modifying existing infrastructure ...
written 15 days ago by Lluís Revilla Sancho460
0
votes
0
answers
67
views
0
answers
Comment: C: My post stopped getting sent via email
... I'm not the admin of the site. Below the post I see an option to set up the method of follow a post. Maybe the issue should be raised at [github repository][1] if it is really a bug. [1]: https://github.com/Bioconductor/support.bioconductor.org "github repository of the website" ...
written 27 days ago by Lluís Revilla Sancho460
1
vote
3
answers
145
views
3
answers
Comment: C: Error in Champ for Bioconductor performing GSEA analysis on Methlayion array dat
... Could you update all the other packages reported at the end of the R session? (curl, colorspace, tibble, openssl, VariantAnnotation, data.table, checkmate and rlang). Also these errors appearing after the R session information means you have some problems in the installation: do you have all the pa ...
written 8 weeks ago by Lluís Revilla Sancho460
1
vote
3
answers
145
views
3
answers
Answer: C: Error in Champ for Bioconductor performing GSEA analysis on Methlayion array dat
... Install the package: "IlluminaHumanMethylationEPICanno.ilm10b**4**.hg19" and see if it happens again ...
written 8 weeks ago by Lluís Revilla Sancho460
0
votes
1
answer
112
views
1
answers
Comment: C: How can I compare the expression of two genes within the same sample?
... You can use the cqn normalization that takes into account the gene length. ...
written 10 weeks ago by Lluís Revilla Sancho460
1
vote
0
answers
114
views
0
answers
Comment: C: WGCNA: cleaning for sample outliers
... 1. Yes, the threshold is to remove samples that are "outliers", that too few follow the same pattern to be reliable 2.Each label is a group of samples, so there are two other groups (besides group 1) that behave differently ...
written 11 weeks ago by Lluís Revilla Sancho460
0
votes
0
answers
99
views
0
answers
Comment: C: Best Practices for Speeding Up/Optimizing EBIMage
... Did you read the help page of [Robust and Efficient Code](https://bioconductor.org/developers/how-to/efficient-code/) and followed its recommendations? (Mainly use vectorized functions) Could you show a profiling of the code to see where are the bottlnecks of your performance? ...
written 11 weeks ago by Lluís Revilla Sancho460

Latest awards to Lluís Revilla Sancho

Popular Question 3 months ago, created a question with more than 1,000 views. For Unable to calculate in parallel what can be calculated on a for loop
Popular Question 5 months ago, created a question with more than 1,000 views. For Unable to calculate in parallel what can be calculated on a for loop
Scholar 5 months ago, created an answer that has been accepted. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Where can I use the VSN source code in C++?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Scholar 21 months ago, created an answer that has been accepted. For A: Does anyone need to install an R package which is used by another package as imp
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Scholar 21 months ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Scholar 21 months ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Voter 21 months ago, voted more than 100 times.
Centurion 24 months ago, created 100 posts.
Supporter 4.2 years ago, voted at least 25 times.
Scholar 4.2 years ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 336 users visited in the last hour