User: Lluís R

gravatar for Lluís R
Lluís R270
Reputation:
270
Status:
Trusted
Location:
European Union
Last seen:
2 days, 4 hours ago
Joined:
2 years, 6 months ago
Email:
l************@gmail.com

I am the author and maintainer of the BioCor package

Posts by Lluís R

<prev • 137 results • page 1 of 14 • next >
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Comment: C: GOstats R Package
... Which kind of file do you have? What where the commands used and the output? ...
written 9 days ago by Lluís R270
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Comment: C: Bioconductor version too old
... Did you repeat the remove.packages("BiocInstaller") until you got an error (make sure you have privileges to remove the BiocInstaller package) ? ...
written 10 days ago by Lluís R270
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Comment: C: Filtering Tophat/cufflinks data for GSEA with topGO
... What do you want to learn when using the KS test with the elim algorithm? What are the functions of your 13k genes?? ...
written 11 days ago by Lluís R270
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Retrieve the reactome ID of a protein
... If I want to retrieve the identifier of a protein in Reactome using the ENTREZ id I can't, both the PATHID and the REACTOMEID are the same. While if I understood correctly they should be different, REACTOMEID, would be the identifier for such protein and PATHID the identifier of the pathway where su ...
reactome.db written 16 days ago by Lluís R270 • updated 4 days ago by assaron100
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Comment: C: Using BiocStyle with plotly
... Yes, for me it is fine to use width and height argument of ggplotly, but which measures should I use to mimic the fig.wide = TRUE? ...
written 19 days ago by Lluís R270
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Using BiocStyle with plotly
... I want to use the BiocStyle and plotly together for an html output. However, plotly (or better ggplotly) doesn't seem to get the the size of the image from the css. Still I want to keep the visualizations I make the more similar (in size) to those from BiocStyle. Which are the width and height of f ...
ggplot2 biocstyle plotly written 23 days ago by Lluís R270 • updated 19 days ago by Andrzej Oleś550
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Answer: A: ReactomePA enrichMap function - a question regarding the connections between nod
... The connection between the dots is half the Dice coefficient. The intersection of genes in each pathway divided by the total amount of genes in these two pathways. The color of the nodes is a representation of the p-value of the pathway. And the size represents the number of genes in the pathway.  ...
written 24 days ago by Lluís R270
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Answer: A: Does anyone need to install an R package which is used by another package as imp
... Depends on where do you write those packages in the DESCRIPTION package, if in Depends or in Imports the behaviour is different. See  this, or Hadley page, and the original source describing the Description file. See also this question on Stack Overflow. ...
written 25 days ago by Lluís R270
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Comment: C: topGO error using annFUN.org
... Strange solution, but glad you manage to work around it ...
written 25 days ago by Lluís R270
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Comment: C: topGO error using annFUN.org
... I don't know if this is the issue, but allGenes should be a named vector because if geneSelectionFun is not specified it is assumed to have p-values and looks for genes whose p-value is below 0.05. Having said that, it seems that it needs an object that is not provided, which might be a bug.  ...
written 27 days ago by Lluís R270

Latest awards to Lluís R

Scholar 25 days ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Teacher 25 days ago, created an answer with at least 3 up-votes. For A: Does anyone need to install an R package which is used by another package as imp
Voter 7 weeks ago, voted more than 100 times.
Centurion 3 months ago, created 100 posts.
Scholar 2.5 years ago, created an answer that has been accepted. For A: WGCNA: What is `soft thresholding`?
Supporter 2.5 years ago, voted at least 25 times.

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