User: Kimpel, Mark W

gravatar for Kimpel, Mark W
Reputation:
890
Status:
Trusted
Location:
Last seen:
12 years, 2 months ago
Joined:
15 years, 7 months ago
Email:
m******@iupui.edu

Posts by Kimpel, Mark W

<prev • 89 results • page 1 of 9 • next >
0
votes
0
answers
458
views
0
answers
Keeping all BioC and CRAN installed packages up to date the easy way
... Jim, Thanks for your advice. Your little code snippet might me a good inclusion in the "how to install bioconductor" page of the website under "how to update your packages". It is perhaps obvious to an experienced user, but may be very helpful to many, as it was to me. I'm posting this as a new t ...
written 12.2 years ago by Kimpel, Mark W890
0
votes
2
answers
1.8k
views
2
answers
issue with color coding heatmaps for positive and negative values
... I would like to "hard code" the colors to be used with certain ranges of values for a heatmap. The issue has occurred because I have discovered than, in a special case of mine, positive numbers are not always yellow and negative numbers are not always blue. Below is an extreme example which demonstr ...
written 12.2 years ago by Kimpel, Mark W890 • updated 12.2 years ago by Wolfgang Huber13k
0
votes
3
answers
760
views
3
answers
Comment: C: problem with GOstats, developmental version?
... Seth and Jenny, I had the exact same problem last night using code of mine that had been working the past year. I updated all packages and the problem persisted. I would have reported it but was too busy with something that was due today. I am also using R-devel. Mark --- Mark W. Kimpel MD ** N ...
written 12.2 years ago by Kimpel, Mark W890
0
votes
2
answers
449
views
2
answers
stat/math question on Category vignette
... I am working my way through the Category vignette and have a question as to how the t statistics for categories are computed from the incidence matrix and individual probeset t-statistics. The code that does this can be found on the bottom of page 3 (development version vignette) and is as follows: ...
pathways category written 12.3 years ago by Kimpel, Mark W890 • updated 12.3 years ago by Seth Falcon7.4k
0
votes
0
answers
466
views
0
answers
trouble extracting R code from vignette using example from www.bioconductor.org
... Not sure if this is an R or BioC question so will cross-post. I cannot extract R code from vignettes because system.file("doc", "my.bioc.package") returns "". I got this code directly off of http://www.bioconductor.org/docs/vignettes.html. A specific example using siggenes follows but I have tested ...
siggenes written 12.3 years ago by Kimpel, Mark W890
0
votes
1
answer
570
views
1
answers
Comment: C: Outlook does threading
... To close out this thread... I have solved my problem with Outlook not displaying threads by creating a Gmail account for all my R and BioC needs and am viewing that with Mozilla Thunderbird. Seems to be working nicely and I now have the benefit of viewing by threads like to many of you have been doi ...
written 12.8 years ago by Kimpel, Mark W890
0
votes
0
answers
640
views
0
answers
[R] Outlook does threading
... Tony, I went to the MS link that you suggested (see below) and it indeed says that "The Arrange by Conversation arrangement shows your e-mail items grouped by message subject or 'thread.'" Instead of arranging by subject, I arranged my view by "conversation" and got exactly the same result that I h ...
written 12.8 years ago by Kimpel, Mark W890
0
votes
1
answer
570
views
1
answer
Outlook does threading
... See below for Bert Gunter's off list reply to me (which I do appreciate). I'm putting it back on the list because it seems there is still confusion regarding the difference between threading and sorting by subject. I thought the example I will give below will serve as instructional for other Outlook ...
written 12.8 years ago by Kimpel, Mark W890 • updated 12.8 years ago by Liaw, Andy360
0
votes
0
answers
419
views
0
answers
[R] possible spam alert
... Peter, Thanks you for your explanation, I had taken Mr. Connolly's message to me to imply that I was not changing the subject line. I use MS Outlook 2007 and, unless I am just not seeing it, Outlook does not normally display the "in reply to" header, I was under the mistaken impression that that wa ...
written 12.8 years ago by Kimpel, Mark W890
0
votes
0
answers
462
views
0
answers
possible spam alert
... The last two times I have originated message threads on R or Bioconductor I have received the message included below from someone named Patrick Connolly. Both times I was the originator of the message thread and used what I thought was a unique subject line that explained as best I could what my que ...
written 12.8 years ago by Kimpel, Mark W890

Latest awards to Kimpel, Mark W

Popular Question 12.2 years ago, created a question with more than 1,000 views. For issue with color coding heatmaps for positive and negative values
Popular Question 12.2 years ago, created a question with more than 1,000 views. For fdr adjustment in limma
Great Question 12.2 years ago, created a question with more than 5,000 views. For limma, FDR, and p.adjust
Popular Question 12.2 years ago, created a question with more than 1,000 views. For limma, FDR, and p.adjust

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour