User: antonvila.s

gravatar for antonvila.s
Reputation:
0
Status:
New User
Last seen:
4 years ago
Joined:
4 years, 9 months ago
Email:
a**********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by antonvila.s

<prev • 8 results • page 1 of 1 • next >
0
votes
1
answer
592
views
1
answer
riboSeqR: legend in plotFS
... Hi Tom, i'd like to change the position of the legend in plotFS, as it sits on top of some of the bars. Can you tell me how to do this? best, Antón ...
riboseqr written 4.6 years ago by antonvila.s0 • updated 4.6 years ago by Thomas J Hardcastle180
0
votes
0
answers
529
views
0
answers
legend in plotFS
... Hi Tom, i'd like to change the position of the legend in plotFS, as it sits on top of some of the bars. Can you tell me how to do this? best, Antón ...
riboseqr written 4.6 years ago by antonvila.s0
0
votes
1
answer
514
views
1
answer
riboSeqR: plotTranscript error
... Hi, I've been trying to plot the alignment of ribosome profiling reads over an individual transcript sequence with the plotTranscript function. I have no RNA-seq data in this case.   > plotTranscript("ENST00000588673", coordinates = GRCh38_ffCs@CDS, riboDat = GRCh38_riboDat, length = 29, cap = ...
riboseqr written 4.6 years ago by antonvila.s0 • updated 4.6 years ago by Thomas J Hardcastle180
0
votes
0
answers
496
views
0
answers
riboSeqR: questions on plotTranscript function
... Hi, I have a few questions regarding the plotTranscript function. 1) what is it actually plotted? If I have several replicates, is this a plot of the total number of reads aligned or the average? 2) I assume that the two y axes are one for the RFs and other for the RNA-seq reads. Which is which? ...
riboseqr written 4.7 years ago by antonvila.s0
0
votes
1
answer
553
views
1
answer
riboSeqR: plotTranscript function not showing coverage
... Hi, According to the vignette "the coverage of RNA sequenced reads is shown as a black curve (axis on the right)". In my case, I do not see either the coverage curve, nor the axis on the right. best, Antón ...
riboseqr written 4.7 years ago by antonvila.s0 • updated 4.7 years ago by Thomas J Hardcastle180
0
votes
1
answer
552
views
1
answer
riboSeqR: criteria used to determine reading frames
... Hi, I'm having trouble to understand which criteria are used for the determination of the reading frame in roboSeqR. Is it the position of the 5' nucleotide relative to the START codon, the position of the first base of the A-site codon, other? best, Antón ...
riboseqr written 4.7 years ago by antonvila.s0 • updated 4.7 years ago by Thomas J Hardcastle180
0
votes
2
answers
711
views
2
answers
Answer: A: org.Hs.eg.db does not rerieve all existing records
... It works! thanks for your answer. ...
written 4.8 years ago by antonvila.s0
0
votes
2
answers
711
views
2
answers
org.Hs.eg.db does not rerieve all existing records
... Hi, when I use org.Hs.eg.db to retrieve gene names with keytype = ËNSEMBL", I get incomplete lists. For example > query  [1] "ENSG00000201291" "ENSG00000206687" "ENSG00000212402" "ENSG00000231747" "ENSG00000239935" "ENSG00000241482"  [7] "ENSG00000243053" "ENSG00000243588" "ENSG00000251811" "EN ...
org.hs.eg.db written 4.8 years ago by antonvila.s0

Latest awards to antonvila.s

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 242 users visited in the last hour