User: nathan.harmston

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Posts by nathan.harmston

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Problem with TxDb.Mmusculus.UCSC.mm9.knownGene
... Within the gene annotations provided in TxDb.Mmusculus.UCSC.mm9.knownGene there appears to be a snoRNA which is almost 36Mb long, however in reality it is only 56bp long. I've used makeTranscriptFromUCSC as well and the same thing happens.  Any ideas why this is happening? Or is there a fix for thi ...
genomicfeatures software error txdb.mmusculus.ucsc.mm9.knowngene written 4.8 years ago by nathan.harmston0 • updated 4.8 years ago by Hervé Pagès ♦♦ 14k
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Comment: C: plotting interactions in gviz (Chia-Pet, HiC, 5C). New feature?
... So we have a package called GenomicInteractions http://www.bioconductor.org/packages/release/bioc/html/GenomicInteractions.html which can make very simple plots of regions using the plotRegion function. This uses bezier curves to plot arcs between different anchors. However, please note that we've f ...
written 4.8 years ago by nathan.harmston0

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