User: Ben Neely

gravatar for Ben Neely
Ben Neely40
Reputation:
40
Status:
New User
Location:
United States
Website:
http://benjaminneely.com/
Last seen:
4 years, 4 months ago
Joined:
4 years, 4 months ago
Email:
b********@gmail.com

Posts by Ben Neely

<prev • 4 results • page 1 of 1 • next >
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Comment: C: voom for spectral counts
... Thanks for the response. I obviously got something mixed up with thinking voom was best for low numbers and the other count based were better at high numbers. Seems the other way around, and I appreciate your clarification and recommendation. As for filtering out these low values, I am still uncert ...
written 4.4 years ago by Ben Neely40
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Comment: C: voom for spectral counts
... Thank you for the excellent response. I am still not completely clear on what "low" could mean, but from my experience I can say that normally something under 5 spectral counts is extremely variable and typically won't yield significance, not because the protein itself is that variable (which it mig ...
written 4.4 years ago by Ben Neely40
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Comment: C: Announcing a short course in computational and statistical proteomics
... Could you or Brendan expand on what types of proteomic workflows will be addressed. Specifically, will it go beyond skyline and spectral library based approaches? I apologize if this was elaborated on in one of the announcements. Thanks. ...
written 4.4 years ago by Ben Neely40
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voom for spectral counts
... I am re-analyzing a data set from many years ago and since then voom has come along and I would like to address its applicability to a typical proteomics label-free analysis. The data is a proteomics data set which is spectral count information for ~200 proteins (I am using spectral counts not emPA ...
proteomics limma massspectrometry voom spectral counts written 4.4 years ago by Ben Neely40 • updated 4.4 years ago by Gordon Smyth37k

Latest awards to Ben Neely

Popular Question 4.3 years ago, created a question with more than 1,000 views. For voom for spectral counts
Student 4.4 years ago, asked a question with at least 3 up-votes. For voom for spectral counts

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