User: lacion

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Posts by lacion

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Error when using readIDAT() from illuminaio
... Hi Kasper and Mike, If you decide to add a VeraCode file to IlluminaTestDataFiles you can find the one I included in my previous post here: https://www.dropbox.com/s/vhaah8gu2k7p3sz/TestPlaca1R004_C005_RED.idat?dl=0 Thanks again for fixing this so fast. Best wishes, Laura ...
written 4.7 years ago by lacion0
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Answer: A: Error when using readIDAT() from illuminaio
... Hi Mike, Thanks a lot for looking into this. I was able to open our files using the new version of illuminaio. It seems the file I sent you was problematic and that is why you were getting a lot of 0s. A different file yields: > head(idat$Quants) MeanBinData TrimmedMeanBinData DevBinData Med ...
written 4.7 years ago by lacion0
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Answer: A: Error when using readIDAT() from illuminaio
... Dropbox it is: https://www.dropbox.com/s/wsls0eb0hkovi3n/Ck01EC032-VBP_R001_C001_GRN.idat?dl=0 Thank you, Kasper! Laura ________ Laura Acion, PhD University of Iowa, USA National Scientific and Technical Research Council, Argentina lacion@gmail.com ...
written 4.7 years ago by lacion0
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Answer: A: Error when using readIDAT() from illuminaio
... Thank you for the fast reply, Kasper. I will be happy to share the file with you. What is the most convenient way to share it? Laura ...
written 4.7 years ago by lacion0
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Error when using readIDAT() from illuminaio
... Hi All, I am trying to read an idat file from an Illumina genotyping array that uses VeraCode microbeads technology. This is my code and the error I get: > library(illuminaio) > idat <- readIDAT("E:/Ck01EC032-VBP_R001_C001_GRN.idat") Error in idx[i, 1] : subscript out of bounds > ses ...
illuminaio idat written 4.7 years ago by lacion0
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Any alternative to GenomeStudio to analyze Illumina VeraCode arrays? Is Beadarray an option?
... Hi, We are using Illumina's VeraCode technology with the GoldenGate assay to investigate 192 SNPs in a case-control study. We are wondering if there is any software alternative to GenomeStudio to analyze the raw data. The beadarray package in Bioconductor seems like a possibility, but since Illumi ...
microarray beadarray illumina veracode written 4.8 years ago by lacion0

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