Admin: Marcel Ramos

gravatar for Marcel Ramos
Marcel Ramos ♦♦ 410
Reputation:
410
Status:
Trusted
Location:
United States
Last seen:
1 month, 1 week ago
Joined:
4 years, 6 months ago
Email:
m***********@roswellpark.org

Posts by Marcel Ramos

<prev • 52 results • page 1 of 6 • next >
1
vote
0
answers
97
views
0
answers
Comment: C: GDCprepare - error
... See also: https://support.bioconductor.org/p/122736/ ...
written 5 weeks ago by Marcel Ramos ♦♦ 410
1
vote
0
answers
97
views
0
answers
Comment: C: GDCprepare - error
... Please use the `reprex` package to run your code in a reproducible way and formatted. See `?reprex::reprex`. ...
written 5 weeks ago by Marcel Ramos ♦♦ 410
3
votes
2
answers
115
views
2
answers
Answer: A: Matching TCGA Aliquot ID to UUID or Barcode
... Hi Dario, Thanks for your question. I've added support for this in TCGAutils `1.5.5`. ``` r library(TCGAutils) UUIDtoBarcode("d85d8a17-8aea-49d3-8a03-8f13141c163b", "aliquot_ids") #> analytes.aliquots.aliquot_id analytes.aliquots.submitter_id #> 13 d85d8a17-8aea-49d3-8a03-8f13141c ...
written 5 weeks ago by Marcel Ramos ♦♦ 410
1
vote
1
answer
2.3k
views
1
answers
Comment: C: Updated Support Site Editor
... For those interested in video format, please see the links below to RMarkdown Coursera course sections: * [Coursera - Data Scientist's Toolbox](https://www.coursera.org/learn/data-scientists-tools/lecture/134kE/r-markdown) * [Coursera - Stats for Genomic Data Science](https://www.coursera.org/learn ...
written 6 months ago by Marcel Ramos ♦♦ 410
2
votes
1
answer
170
views
1
answers
Answer: A: Proper way to deprecate an S4 generic
... Hi Michael! First, please make sure that other developers are not importing your generic from your package. You could try the `revdep` package to check for those https://github.com/r-lib/revdepcheck. Otherwise, your change could break other packages. Also, if they are using your generic, it wo ...
written 6 months ago by Marcel Ramos ♦♦ 410
2
votes
1
answer
181
views
1
answers
Answer: A: Go back to GRanges used as RaggedExperiment input
... Hi Vinicius! The `RaggedExperiment` class is designed to facilitate matrix-like representation of ragged ranges from a `GRangesList` such as: ``` > assay(ragexp) sample1 sample2 A 3 NA B 4 NA C 5 NA D NA 1 E NA 2 ``` Because the class is ...
written 7 months ago by Marcel Ramos ♦♦ 410
0
votes
0
answers
230
views
0
answers
Comment: C: Adding information to the Installation document (https://www.bioconductor.org/in
... Hi Nico, Thank you for your feedback. We have made a small adjustment to theinstall page on Bioconductor.org. The pull request can be seen here: https://github.com/Bioconductor/bioconductor.org/pull/18 To (sort of) answer your question, we have detailed how to do 1 and 2 in the vignette and we hop ...
written 9 months ago by Marcel Ramos ♦♦ 410
0
votes
1
answer
431
views
1
answers
Comment: C: Can't access devel version of ExperimentHub in Travis CI
... There's an issue with (CRAN) BiocManager when switching to devel. Can you try using the GitHub version of BiocManager? remotes::install_github("Bioconductor/BiocManager") ...
written 10 months ago by Marcel Ramos ♦♦ 410
0
votes
1
answer
431
views
1
answers
Comment: C: Can't access devel version of ExperimentHub in Travis CI
... Have you tried to delete your Travis CI cache and re-running the build? ...
written 10 months ago by Marcel Ramos ♦♦ 410
0
votes
1
answer
431
views
1
answers
Comment: C: Can't access devel version of ExperimentHub in Travis CI
... Hi Kyle, Can you provide the GitHub repository of your package and a link to the Travis build page? Thanks, Marcel ...
written 10 months ago by Marcel Ramos ♦♦ 410

Latest awards to Marcel Ramos

Scholar 7 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 7 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Supporter 15 months ago, voted at least 25 times.
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Scholar 2.2 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 2.4 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 2.4 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 113 users visited in the last hour