Admin: Marcel Ramos

gravatar for Marcel Ramos
Marcel Ramos ♦♦ 410
Reputation:
410
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Trusted
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United States
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5 days, 1 hour ago
Joined:
4 years, 10 months ago
Email:
m***********@roswellpark.org

Posts by Marcel Ramos

<prev • 54 results • page 1 of 6 • next >
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Comment: C: Matching TCGA Aliquot ID to UUID or Barcode
... Thanks this has been fixed. -Marcel ...
written 7 weeks ago by Marcel Ramos ♦♦ 410
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Comment: C: Matching TCGA Aliquot ID to UUID or Barcode
... Hi e0338272, Thank you for your report. I will look into this today. It seems like the function should be returning multiple identifiers. I'll check the package's tests. Follow this issue for updates: https://github.com/waldronlab/TCGAutils/issues/24 Best, Marcel ...
written 7 weeks ago by Marcel Ramos ♦♦ 410
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Comment: C: GDCprepare - error
... See also: https://support.bioconductor.org/p/122736/ ...
written 5 months ago by Marcel Ramos ♦♦ 410
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Comment: C: GDCprepare - error
... Please use the `reprex` package to run your code in a reproducible way and formatted. See `?reprex::reprex`. ...
written 5 months ago by Marcel Ramos ♦♦ 410
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Answer: A: Matching TCGA Aliquot ID to UUID or Barcode
... Hi Dario, Thanks for your question. I've added support for this in TCGAutils `1.5.5`. ``` r library(TCGAutils) UUIDtoBarcode("d85d8a17-8aea-49d3-8a03-8f13141c163b", "aliquot_ids") #> analytes.aliquots.aliquot_id analytes.aliquots.submitter_id #> 13 d85d8a17-8aea-49d3-8a03-8f13141c ...
written 5 months ago by Marcel Ramos ♦♦ 410
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Comment: C: Updated Support Site Editor
... For those interested in video format, please see the links below to RMarkdown Coursera course sections: * [Coursera - Data Scientist's Toolbox](https://www.coursera.org/learn/data-scientists-tools/lecture/134kE/r-markdown) * [Coursera - Stats for Genomic Data Science](https://www.coursera.org/learn ...
written 9 months ago by Marcel Ramos ♦♦ 410
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Answer: A: Proper way to deprecate an S4 generic
... Hi Michael! First, please make sure that other developers are not importing your generic from your package. You could try the `revdep` package to check for those https://github.com/r-lib/revdepcheck. Otherwise, your change could break other packages. Also, if they are using your generic, it wo ...
written 10 months ago by Marcel Ramos ♦♦ 410
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Answer: A: Go back to GRanges used as RaggedExperiment input
... Hi Vinicius! The `RaggedExperiment` class is designed to facilitate matrix-like representation of ragged ranges from a `GRangesList` such as: ``` > assay(ragexp) sample1 sample2 A 3 NA B 4 NA C 5 NA D NA 1 E NA 2 ``` Because the class is ...
written 11 months ago by Marcel Ramos ♦♦ 410
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Comment: C: Adding information to the Installation document (https://www.bioconductor.org/in
... Hi Nico, Thank you for your feedback. We have made a small adjustment to theinstall page on Bioconductor.org. The pull request can be seen here: https://github.com/Bioconductor/bioconductor.org/pull/18 To (sort of) answer your question, we have detailed how to do 1 and 2 in the vignette and we hop ...
written 13 months ago by Marcel Ramos ♦♦ 410
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Comment: C: Can't access devel version of ExperimentHub in Travis CI
... There's an issue with (CRAN) BiocManager when switching to devel. Can you try using the GitHub version of BiocManager? remotes::install_github("Bioconductor/BiocManager") ...
written 14 months ago by Marcel Ramos ♦♦ 410

Latest awards to Marcel Ramos

Scholar 11 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 11 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Supporter 19 months ago, voted at least 25 times.
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Scholar 2.5 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 2.7 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 2.7 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data

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