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Admin: Marcel Ramos

gravatar for Marcel Ramos
Marcel Ramos ♦♦ 350
Reputation:
350
Status:
Trusted
Location:
United States
Last seen:
1 week, 1 day ago
Joined:
4 years ago
Email:
m***********@roswellpark.org

Posts by Marcel Ramos

<prev • 48 results • page 1 of 5 • next >
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Answer: A: Proper way to deprecate an S4 generic
... Hi Michael! First, please make sure that other developers are not importing your generic from your package. You could try the `revdep` package to check for those https://github.com/r-lib/revdepcheck. Otherwise, your change could break other packages. Also, if they are using your generic, it wo ...
written 11 days ago by Marcel Ramos ♦♦ 350
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Answer: A: Go back to GRanges used as RaggedExperiment input
... Hi Vinicius! The `RaggedExperiment` class is designed to facilitate matrix-like representation of ragged ranges from a `GRangesList` such as: ``` > assay(ragexp) sample1 sample2 A 3 NA B 4 NA C 5 NA D NA 1 E NA 2 ``` Because the class is ...
written 5 weeks ago by Marcel Ramos ♦♦ 350
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Comment: C: Adding information to the Installation document (https://www.bioconductor.org/in
... Hi Nico, Thank you for your feedback. We have made a small adjustment to theinstall page on Bioconductor.org. The pull request can be seen here: https://github.com/Bioconductor/bioconductor.org/pull/18 To (sort of) answer your question, we have detailed how to do 1 and 2 in the vignette and we hop ...
written 3 months ago by Marcel Ramos ♦♦ 350
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Comment: C: Can't access devel version of ExperimentHub in Travis CI
... There's an issue with (CRAN) BiocManager when switching to devel. Can you try using the GitHub version of BiocManager? remotes::install_github("Bioconductor/BiocManager") ...
written 4 months ago by Marcel Ramos ♦♦ 350
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Comment: C: Can't access devel version of ExperimentHub in Travis CI
... Have you tried to delete your Travis CI cache and re-running the build? ...
written 4 months ago by Marcel Ramos ♦♦ 350
0
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Comment: C: Can't access devel version of ExperimentHub in Travis CI
... Hi Kyle, Can you provide the GitHub repository of your package and a link to the Travis build page? Thanks, Marcel ...
written 4 months ago by Marcel Ramos ♦♦ 350
0
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Comment: C: MultiAssayExperiment: Error in dimnames(x) <- dn : length of 'dimnames' [2] not
... Hi Mario, Are you sure you have the latest version? It just re-ran it and it works for me. > sessionInfo() R version 3.5.1 Patched (2018-09-23 r75356) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.1 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.s ...
written 4 months ago by Marcel Ramos ♦♦ 350
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Answer: A: MultiAssayExperiment: Error in dimnames(x) <- dn : length of 'dimnames' [2] not
... Ciao Mario, Thanks for reporting this. This should be fixed in MultiAssayExperiment version 1.7.21. Best regards, Marcel ...
written 4 months ago by Marcel Ramos ♦♦ 350
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Comment: C: MultiAssayExperiment:combine two multiassayexperiment object
...     Prego!      ...
written 5 months ago by Marcel Ramos ♦♦ 350
2
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Answer: A: MultiAssayExperiment:combine two multiassayexperiment object
... Hi Mario, Thank you for posting this enhancement request. I have added it to MultiAssayExperiment 1.7.19 (devel). The stipulation is that experiment names must be unique across MultiAssayExperiment objects. Best regards, Marcel ...
written 5 months ago by Marcel Ramos ♦♦ 350

Latest awards to Marcel Ramos

Scholar 5 weeks ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Supporter 9 months ago, voted at least 25 times.
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Scholar 20 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 22 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 22 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data

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