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Admin: Marcel Ramos
Marcel Ramos ♦♦ 350
- Reputation:
- 350
- Status:
- Trusted
- Location:
- United States
- Last seen:
- 1 week, 1 day ago
- Joined:
- 4 years ago
- Email:
- m***********@roswellpark.org
Posts by Marcel Ramos
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2
votes
1
answer
52
views
1
answers
... Hi Michael!
First, please make sure that other developers are not importing your generic from
your package. You could try the `revdep` package to check for those
https://github.com/r-lib/revdepcheck.
Otherwise, your change could break other packages. Also, if they are using your
generic, it wo ...
written 11 days ago by
Marcel Ramos ♦♦ 350
2
votes
1
answer
75
views
1
answers
... Hi Vinicius!
The `RaggedExperiment` class is designed to facilitate matrix-like representation of ragged ranges
from a `GRangesList` such as:
```
> assay(ragexp)
sample1 sample2
A 3 NA
B 4 NA
C 5 NA
D NA 1
E NA 2
```
Because the class is ...
written 5 weeks ago by
Marcel Ramos ♦♦ 350
0
votes
0
answers
118
views
0
answers
... Hi Nico,
Thank you for your feedback. We have made a small adjustment to theinstall page on Bioconductor.org. The pull request can be seen here: https://github.com/Bioconductor/bioconductor.org/pull/18
To (sort of) answer your question, we have detailed how to do 1 and 2 in the vignette and we hop ...
written 3 months ago by
Marcel Ramos ♦♦ 350
0
votes
1
answer
262
views
1
answers
... There's an issue with (CRAN) BiocManager when switching to devel.
Can you try using the GitHub version of BiocManager?
remotes::install_github("Bioconductor/BiocManager")
...
written 4 months ago by
Marcel Ramos ♦♦ 350
0
votes
1
answer
262
views
1
answers
... Have you tried to delete your Travis CI cache and re-running the build?
...
written 4 months ago by
Marcel Ramos ♦♦ 350
0
votes
1
answer
262
views
1
answers
... Hi Kyle,
Can you provide the GitHub repository of your package and a link to the Travis build page?
Thanks,
Marcel ...
written 4 months ago by
Marcel Ramos ♦♦ 350
0
votes
1
answer
293
views
1
answers
... Hi Mario, Are you sure you have the latest version? It just re-ran it and it works for me.
> sessionInfo()
R version 3.5.1 Patched (2018-09-23 r75356)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.s ...
written 4 months ago by
Marcel Ramos ♦♦ 350
2
votes
1
answer
293
views
1
answers
... Ciao Mario,
Thanks for reporting this.
This should be fixed in MultiAssayExperiment version 1.7.21.
Best regards,
Marcel
...
written 4 months ago by
Marcel Ramos ♦♦ 350
2
votes
1
answer
150
views
1
answers
... Hi Mario,
Thank you for posting this enhancement request.
I have added it to MultiAssayExperiment 1.7.19 (devel).
The stipulation is that experiment names must be unique across MultiAssayExperiment objects.
Best regards,
Marcel
...
written 5 months ago by
Marcel Ramos ♦♦ 350
Latest awards to Marcel Ramos
Scholar
5 weeks ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Supporter
9 months ago,
voted at least 25 times.
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Scholar
20 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
22 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
22 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
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