Admin: Marcel Ramos
Marcel Ramos ♦♦ 60
- Reputation:
- 60
- Status:
- Trusted
- Location:
- United States
- Last seen:
- 2 days, 5 hours ago
- Joined:
- 2 years, 7 months ago
- Email:
- m****************@roswellpark.org
Posts by Marcel Ramos
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... Dear Henry,
I've tried to run the examples under the RCircos.Reset.Core.Components {RCircos} page.
There are a couple of typos in the examples (in asterisks below):
rows <- which(ideo$BandColor=="red"**)**
RCircos.Reset.Plot.Param**e**ters(params)
Could you also please remove the ## Not ru ...
written 5 days ago by
Marcel Ramos ♦♦ 60
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... Hi Assa Yeroslaviz,
If you collapse into a single data.frame, each row will represent a different genomic location.
You may not want this.
Nevertheless, if you do want to go ahead and do this, you can try this:
# Take all the score values
scoreList <- lapply(tiles.list, function(x) mcols(x))
# I ...
written 10 days ago by
Marcel Ramos ♦♦ 60
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2
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... Update: RaggedExperiment is now in Bioconductor devel!
...
written 5 months ago by
Marcel Ramos ♦♦ 60
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2
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... Update: Please see the latest package submission (RaggedExperiment) for this type of data. https://github.com/Bioconductor/Contributions/issues/339 and the GitHub version of the package https://github.com/Bioconductor/RaggedExperiment/
Sincerely,
Marcel
...
written 5 months ago by
Marcel Ramos ♦♦ 60
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156
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... Hi Rob,
I would really discourage the use of View for anything other than a matrix or data.frame.
The class should have a good enough show method so that you wouldn't need to use View.
Regards,
Marcel
...
written 5 months ago by
Marcel Ramos ♦♦ 60
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249
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Answer:
A: seqlm installation error
... Hi niutster,
A couple of points:
If you are using Bioconductor, the recommended way to install a github package is `BiocInstaller::biocLite("raivokolde/seqlm")`.
Since this package is not part of Bioconductor, we can't provide support with any issues that may arise from it.
I tried to ins ...
written 7 months ago by
Marcel Ramos ♦♦ 60
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227
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... Hi,
There are several ways you can check and format your code as suggested in BiocCheck.
These include:
goodpractice::gp (checker function - MangoTheCat/goodpractice github repository)
lintr (checker package)
formatR (text formatting package)
RStudio settings (best used when writing)
You ...
written 10 months ago by
Marcel Ramos ♦♦ 60
0
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586
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Comment:
C: Issue of clusterprofiler package
... Hi,
Generally, the maintainer is reponsive on GitHub. He should also respond here.
You can create an issue at github.com/guangchuangyu/clusterprofiler/issues just to make sure he is aware.
Regards,
Marcel
...
written 10 months ago by
Marcel Ramos ♦♦ 60
0
votes
3
answers
586
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3
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... Hi,
Generally, the maintainer is reponsive on GitHub. He should also respond here.
You can create an issue at github.com/guangchuangyu/clusterprofiler/issues just to make sure he is aware.
Regards,
Marcel
...
written 10 months ago by
Marcel Ramos ♦♦ 60
0
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1
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244
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1
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Answer:
A: "ALL" package under biocLite
... Hi Fakhrul,
Note: In the future please provide any error messages in English.
It seems to be an issue with the mapping of your network drive. The message says that UNC paths are not supported. Please map the network drive to something that is recognizable by R (i.e., "E:\path\to\folder\" ). You ...
written 10 months ago by
Marcel Ramos ♦♦ 60
Latest awards to Marcel Ramos
Scholar
5 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
5 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
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