Admin: Marcel Ramos
Marcel Ramos ♦♦ 310
- Reputation:
- 310
- Status:
- Trusted
- Location:
- United States
- Last seen:
- 3 weeks, 3 days ago
- Joined:
- 3 years, 10 months ago
- Email:
- m***********@roswellpark.org
Posts by Marcel Ramos
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... Hi Nico,
Thank you for your feedback. We have made a small adjustment to theinstall page on Bioconductor.org. The pull request can be seen here: https://github.com/Bioconductor/bioconductor.org/pull/18
To (sort of) answer your question, we have detailed how to do 1 and 2 in the vignette and we hop ...
written 4 weeks ago by
Marcel Ramos ♦♦ 310
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... There's an issue with (CRAN) BiocManager when switching to devel.
Can you try using the GitHub version of BiocManager?
remotes::install_github("Bioconductor/BiocManager")
...
written 9 weeks ago by
Marcel Ramos ♦♦ 310
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... Have you tried to delete your Travis CI cache and re-running the build?
...
written 9 weeks ago by
Marcel Ramos ♦♦ 310
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... Hi Kyle,
Can you provide the GitHub repository of your package and a link to the Travis build page?
Thanks,
Marcel ...
written 9 weeks ago by
Marcel Ramos ♦♦ 310
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... Hi Mario, Are you sure you have the latest version? It just re-ran it and it works for me.
> sessionInfo()
R version 3.5.1 Patched (2018-09-23 r75356)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.s ...
written 10 weeks ago by
Marcel Ramos ♦♦ 310
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... Ciao Mario,
Thanks for reporting this.
This should be fixed in MultiAssayExperiment version 1.7.21.
Best regards,
Marcel
...
written 10 weeks ago by
Marcel Ramos ♦♦ 310
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... Hi Mario,
Thank you for posting this enhancement request.
I have added it to MultiAssayExperiment 1.7.19 (devel).
The stipulation is that experiment names must be unique across MultiAssayExperiment objects.
Best regards,
Marcel
...
written 12 weeks ago by
Marcel Ramos ♦♦ 310
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... I get the idea but one requirement would be to keep experiment names unique across `MultiAssayExperiment` objects. I am coming up with a patch to allow this. Thanks, MR
...
written 12 weeks ago by
Marcel Ramos ♦♦ 310
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... Hi all,
Apologies for the delay but you can now use names<- to replace
the names of experiments in a MultiAssayExperiment.
library(MultiAssayExperiment)
example(MultiAssayExperiment)
names(mae) <- c("AffyTwo", "Methyl450", "RNA", "GISTICv2")
mae
Please ensure that you have version >= 1.7. ...
written 3 months ago by
Marcel Ramos ♦♦ 310
Latest awards to Marcel Ramos
Teacher
3 months ago,
created an answer with at least 3 up-votes.
For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Supporter
6 months ago,
voted at least 25 times.
Scholar
18 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
20 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
20 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
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