Admin: Marcel Ramos
Marcel Ramos ♦♦ 410
- Reputation:
- 410
- Status:
- Trusted
- Location:
- United States
- Last seen:
- 5 days, 1 hour ago
- Joined:
- 4 years, 10 months ago
- Email:
- m***********@roswellpark.org
Posts by Marcel Ramos
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... Thanks this has been fixed. -Marcel ...
written 7 weeks ago by
Marcel Ramos ♦♦ 410
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... Hi e0338272,
Thank you for your report.
I will look into this today. It seems like the function should be returning multiple identifiers.
I'll check the package's tests.
Follow this issue for updates: https://github.com/waldronlab/TCGAutils/issues/24
Best,
Marcel ...
written 7 weeks ago by
Marcel Ramos ♦♦ 410
1
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219
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Comment:
C: GDCprepare - error
... See also:
https://support.bioconductor.org/p/122736/ ...
written 5 months ago by
Marcel Ramos ♦♦ 410
1
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Comment:
C: GDCprepare - error
... Please use the `reprex` package to run your code in a reproducible way and formatted. See `?reprex::reprex`. ...
written 5 months ago by
Marcel Ramos ♦♦ 410
3
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... Hi Dario,
Thanks for your question. I've added support for this in TCGAutils `1.5.5`.
``` r
library(TCGAutils)
UUIDtoBarcode("d85d8a17-8aea-49d3-8a03-8f13141c163b", "aliquot_ids")
#> analytes.aliquots.aliquot_id analytes.aliquots.submitter_id
#> 13 d85d8a17-8aea-49d3-8a03-8f13141c ...
written 5 months ago by
Marcel Ramos ♦♦ 410
1
vote
1
answer
2.6k
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1
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Comment:
C: Updated Support Site Editor
... For those interested in video format, please see the links below to RMarkdown
Coursera course sections:
* [Coursera - Data Scientist's Toolbox](https://www.coursera.org/learn/data-scientists-tools/lecture/134kE/r-markdown)
* [Coursera - Stats for Genomic Data Science](https://www.coursera.org/learn ...
written 9 months ago by
Marcel Ramos ♦♦ 410
2
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1
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209
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... Hi Michael!
First, please make sure that other developers are not importing your generic from
your package. You could try the `revdep` package to check for those
https://github.com/r-lib/revdepcheck.
Otherwise, your change could break other packages. Also, if they are using your
generic, it wo ...
written 10 months ago by
Marcel Ramos ♦♦ 410
2
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1
answer
230
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1
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... Hi Vinicius!
The `RaggedExperiment` class is designed to facilitate matrix-like representation of ragged ranges
from a `GRangesList` such as:
```
> assay(ragexp)
sample1 sample2
A 3 NA
B 4 NA
C 5 NA
D NA 1
E NA 2
```
Because the class is ...
written 11 months ago by
Marcel Ramos ♦♦ 410
0
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0
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283
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... Hi Nico,
Thank you for your feedback. We have made a small adjustment to theinstall page on Bioconductor.org. The pull request can be seen here: https://github.com/Bioconductor/bioconductor.org/pull/18
To (sort of) answer your question, we have detailed how to do 1 and 2 in the vignette and we hop ...
written 13 months ago by
Marcel Ramos ♦♦ 410
0
votes
1
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492
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1
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... There's an issue with (CRAN) BiocManager when switching to devel.
Can you try using the GitHub version of BiocManager?
remotes::install_github("Bioconductor/BiocManager")
...
written 14 months ago by
Marcel Ramos ♦♦ 410
Latest awards to Marcel Ramos
Scholar
11 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
11 months ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Teacher
16 months ago,
created an answer with at least 3 up-votes.
For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Supporter
19 months ago,
voted at least 25 times.
Teacher
19 months ago,
created an answer with at least 3 up-votes.
For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Scholar
2.5 years ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
2.7 years ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
Scholar
2.7 years ago,
created an answer that has been accepted.
For A: Classes and methods for working with segmented copy number data
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