User: horcsct

gravatar for horcsct
horcsct0
Reputation:
0
Status:
New User
Last seen:
3 years, 12 months ago
Joined:
4 years, 9 months ago
Email:
h******@yahoo.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by horcsct

<prev • 7 results • page 1 of 1 • next >
1
vote
1
answer
649
views
1
answer
arrayQualityMetrics for outlier detection
... Hi all, I want use arrayQualityMetrics for outlier detection and have two questions: 1- I will select only some of GSM of a GSE for my analysis.  Should I load all GSM for QC or only selected ones? 2- The arrayQualityMetrics report result of 6 different method for outlier: - Distances between ar ...
microarray arrayqualitymetrics outlier written 4.0 years ago by horcsct0 • updated 4.0 years ago by Wolfgang Huber13k
0
votes
0
answers
794
views
0
answers
RankProd: simultaneously up and down regulated gene
... Hi, With a cuttoff=0.5, the RankProd create two table for up and down regulated genes but some of genes appear in both tables. I think a specific gene can not up and down regulated simultaneously. What is wrong? Thanks  ...
rankprod differential gene expression written 4.2 years ago by horcsct0
0
votes
2
answers
1.5k
views
2
answers
Comment: C: Sort clusterProfiler result
... Thanks Guangchuang Yu, But this only sort displayed category (showCategory) not all category. I want plot 10 category with max count. ...
written 4.2 years ago by horcsct0
2
votes
2
answers
1.5k
views
2
answers
Sort clusterProfiler result
... Hi, How can I sort the clusterProfiler package results (groupGOResult object) for instance according GeneRatio in groupGO? Thanks. ...
clusterprofiler sort written 4.2 years ago by horcsct0 • updated 2.4 years ago by sghoshucla0
0
votes
0
answers
629
views
0
answers
Combine RankProd output Tables (up & down)
... Dear all, The result of DEG analysis e.g. by limma is a sorted list by p-value for genes up or down regulated. But RankProd outputs two separate tables for up regulated genes and down regulated ones. How can I combine tables for obtain a single ordered list by their importance in the difference bet ...
rankprod written 4.2 years ago by horcsct0
0
votes
1
answer
1.1k
views
1
answers
Comment: C: GOSemSim problem for yeast proteins
... Thanks very much. ...
written 4.8 years ago by horcsct0
1
vote
1
answer
1.1k
views
1
answer
GOSemSim problem for yeast proteins
... I have a problem when I try to use GOSemSim to calculate the GO semantic similarities between yeast proteins. geneSim("852494", "854869", ont = "MF", organism="yeast", measure="Resnik") return below result: [1] NA Warning messages: 1: In is.na(go) : is.na() applied to non-(list or vector) of type ...
yeast gosemsim written 4.8 years ago by horcsct0 • updated 4.8 years ago by Guangchuang Yu1.1k

Latest awards to horcsct

Popular Question 4.0 years ago, created a question with more than 1,000 views. For Sort clusterProfiler result
Popular Question 4.0 years ago, created a question with more than 1,000 views. For Sort clusterProfiler result

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 338 users visited in the last hour