User: rasi1983

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rasi198310
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United States
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1 year, 8 months ago
Joined:
4 years, 7 months ago
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Posts by rasi1983

<prev • 4 results • page 1 of 1 • next >
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Coverage function assigns wrong weights for gapped alignments
... I am calculating weighted coverage for two reads one of which has a gap. I find that the coverage weights are assigned wrong after the gapped region due to the GAlignment being converted to GRangesList with multiple GRanges. Is there a way to calculate the right weighted coverage? I can correct thi ...
coverage genomicalignments splicing written 2.5 years ago by rasi198310 • updated 9 days ago by Michael Lawrence11k
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Comment: C: problem with getting a subset of alignments mapping to a GRange using readGAlign
... Thanks for the clarification.  ...
written 4.6 years ago by rasi198310
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Comment: C: problem with getting a subset of alignments mapping to a GRange using readGAlign
... Thanks, I missed an `R` gotcha: you can pass nonexistent parameters and not get any errors! ...
written 4.6 years ago by rasi198310
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problem with getting a subset of alignments mapping to a GRange using readGAlignmentsFromBam
... I am unable to read a subset of alignments from a Bamfile as specified by a GRange. I am new to Bioconductor - am I missing something obvious?  779 Alignments in the Bamfile > readGAlignmentsFromBam(Bamfile) GAlignments object with 779 alignments and 0 metadata columns: seq ...
genomicalignments scanbamparam written 4.6 years ago by rasi198310 • updated 4.6 years ago by James W. MacDonald51k

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