User: kelvinfrog75

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Posts by kelvinfrog75

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Comment: C: convert fastq file to fasta using shortread package
... Great. I will look into that. Thanks. ...
written 2.7 years ago by kelvinfrog750
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Answer: A: convert fastq file to fasta using shortread package
... Oh, it works now. Thanks a lot. BTW, do you know if R can do fastq quality filtering on illimina sequence?  The one I have been using is the fastq quality trimmer from FASTX. I wonder if R has its own function.  ...
written 2.7 years ago by kelvinfrog750
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Trim sequence using R
... I have a DNA sequence files and many sequences start like this  "CCCATGCAGACATAGTG" or  "CTCCATGCAGACATAGTG" and I have a tag sequence which is "ATGCA". I want to remove all the "ATGCA" as well as "CC" or "CTC" before that. So the final product will be  "GACATAGTG". Does anyone know any R function c ...
bioconductor written 2.7 years ago by kelvinfrog750
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convert fastq file to fasta using shortread package
... This might be a very simple question. I have some Illumina fastq file and I want to convert to fasta file. Can someone show me how to convert fastq to fasta file. When I use writeFasta(sample_1.fq), readFastq(sample_1.fq), sread(sample_1.fq), I got error message like these: Error in writeFasta(samp ...
shortread illumina written 2.7 years ago by kelvinfrog750 • updated 2.7 years ago by Martin Morgan ♦♦ 20k

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Popular Question 2.7 years ago, created a question with more than 1,000 views. For convert fastq file to fasta using shortread package

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