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Posts by mjsduncan
... mr lawrence was correct! using "bcftools query" i pulled out the REF and ALT columns, revealing: (summary of columns as factors) # REF ALT # A:203355 .: 10054 # C:231249 A:227813 # D: 69 C:201276 # G:230594 D: 106 # I: 110 G:201118 # T:202890 ...
... greetings! i'm using the development version of bioconductor with R-devel source from 3/23, rstudio 0.98.1103 running on ubuntu 14.04. after converting a bed-bim-fam file set to vcf with the latest github pull of plink-ng (plink v1.90), i am getting this error using "readVcf("file.vcf", geno = "B3 ...
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