User: mjsduncan

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Posts by mjsduncan

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Comment: C: Error reading vcf converted from bed file
... mr lawrence was correct!  using "bcftools query" i pulled out the REF and ALT columns, revealing: (summary of columns as factors) #  REF              ALT #   A:203355   .: 10054 #   C:231249   A:227813 #   D:    69       C:201276 #   G:230594   D:   106 #   I:   110        G:201118 #   T:202890    ...
written 4.1 years ago by mjsduncan0
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Error reading vcf converted from bed file
... greetings!  i'm using the development version of bioconductor with R-devel source from 3/23, rstudio 0.98.1103 running on ubuntu 14.04. after converting a bed-bim-fam file set to vcf with the latest github pull of plink-ng (plink v1.90), i am getting this error using "readVcf("file.vcf", geno = "B3 ...
bioc-devel readvcf plink file conversion bed written 4.2 years ago by mjsduncan0

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