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Posts by thibault.lorin
... Dear Bioconductor users, I am using the rpkm() function of edgeR and I was wondering how the rpkm value is calculated by this function. I tried: > library(edgeR) > rpkm function (x, ...) UseMethod("rpkm") <environment: namespace:edgeR> So I tried: > UseMethod("rpkm") Error in ...
... Thank you very much! 1. So do you mean it is better to use FPKM or RPKM instead of raw counts? 2. And what do you mean by "there is no statistical test?" If the FPKM value for one gene is always higher (in every tissue) than for another gene, I cannot say that the RNA level is higher? ...
... Hello, I am new to this forum so please forgive me if my question is a bit naive :) - I have several tissues: A, B and C (and 2 replicates per tissue) - I have many genes: gene1a, gene1b, gene2, gene3... - genes 1a and 1b are paralogs In edegR I can do multiple comparisons of gene expression fo ...
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Popular Question 4.0 years ago, created a question with more than 1,000 views. For Get source code for rpkm() function in edgeR
Popular Question 4.0 years ago, created a question with more than 1,000 views. For Gene expression between two copies of same gene:use counts or RPKM or FPKM?
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