User: thibault.lorin

Reputation:
10
Status:
New User
Location:
Switzerland
Last seen:
2 years ago
Joined:
2 years, 8 months ago
Email:
t*************@unibas.ch

Posts by thibault.lorin

<prev • 3 results • page 1 of 1 • next >
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Get source code for rpkm() function in edgeR
... Dear Bioconductor users, I am using the rpkm() function of edgeR and I was wondering how the rpkm value is calculated by this function. I tried: > library(edgeR) > rpkm function (x, ...) UseMethod("rpkm") <environment: namespace:edgeR> So I tried: > UseMethod("rpkm") Error in ...
edger rpkm source code written 2.7 years ago by thibault.lorin10 • updated 2.7 years ago by Martin Morgan ♦♦ 21k
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Comment: C: Gene expression between two copies of same gene:use counts or RPKM or FPKM?
... Thank you very much! 1. So do you mean it is better to use FPKM or RPKM instead of raw counts? 2. And what do you mean by "there is no statistical test?" If the FPKM value for one gene is always higher (in every tissue) than for another gene, I cannot say that the RNA level is higher?  ...
written 2.7 years ago by thibault.lorin10
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Gene expression between two copies of same gene:use counts or RPKM or FPKM?
... Hello, I am new to this forum so please forgive me if my question is a bit naive :) - I have several tissues: A, B and C (and 2 replicates per tissue) - I have many genes: gene1a, gene1b, gene2, gene3... - genes 1a and 1b are paralogs In edegR I can do multiple comparisons of gene expression fo ...
rnaseq edger rpkm count fpkm written 2.7 years ago by thibault.lorin10 • updated 2.7 years ago by Gordon Smyth32k

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