User: jbarker2

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jbarker20
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Posts by jbarker2

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Matching New Samples to Differential Expression Profile
... I need help figuring out the best way to do the following experiment.  I did some previous work which separated the samples into 4 groups based on data other than RNASeq.  I then used EBSeq to look for differentially expressed genes in those groups, and I found 6 genes.  Now I have a fresh set of sa ...
rnaseq ebseq differential expression written 4.2 years ago by jbarker20
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Comment: C: EBSeq package gives NaN Values for EBMultiTest
... I tried to follow up on Michael Love' suggestion, but when I changed PoolLower=0, PoolUpper = 1 to include everything, I still got all NaNs. ...
written 4.4 years ago by jbarker20
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EBSeq package gives NaN Values for EBMultiTest
... Hello, I am using the EBSeq to look at differential expression in RNA seq data.  I have 99 samples and 20531 genes and four conditions.  I made my ran the code largely following the example in the "Gene level DE analysis (more than two conditions)" from the EBSeq vignette pdf.   Specifically, for m ...
rnaseq ebseq differential expression written 4.4 years ago by jbarker20

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