User: Wade Davis

gravatar for Wade Davis
Wade Davis0
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USA
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8 months, 1 week ago
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2 years, 6 months ago
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j***********@abbvie.com

useR since 1999 but with a new user name for the updated site.

Posts by Wade Davis

<prev • 7 results • page 1 of 1 • next >
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Answer: A: Epigenetic clock (Horvath): package?
... I would willing to put effort into this (along with others in my group) if we can get some of the underlying code, particularly the "advanced method" which is only available in the online calculator.   Wade ...
written 8 months ago by Wade Davis0
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Answer: A: Different errors when attempting to normalize using wateRmelon (v1.1.18)
... Update: If I just call load(wateRmelon) I still get the error. For now, I am going to just construct a new methyLumiSet object and proceed. Thanks for the time you spent looking into it.   ...
written 10 months ago by Wade Davis0
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Answer: A: Different errors when attempting to normalize using wateRmelon (v1.1.18)
... Interesting about the names producing that, but I don't think it is caused by NAs in my data: any(is.na(colnames(betas(melon.LumiSet.norm)))) [1] FALSE any(is.na(colnames(norm$beta))) [1] FALSE any(is.na(rownames(betas(melon.LumiSet.norm)))) [1] FALSE any(is.na(rownames(norm$beta))) [1] FALSE I ...
written 10 months ago by Wade Davis0
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Answer: A: Different errors when attempting to normalize using wateRmelon (v1.1.18)
... Hi Tyler, Thanks for the quick reply and suggestion. I have tried that and the problem still exists when you attempt to replace any of the data in the slots using '<-'. See below for a trivial case in the next to last line where I just take the data and add zero to it, and attempt to replace it ...
written 10 months ago by Wade Davis0
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Different errors when attempting to normalize using wateRmelon (v1.1.18)
... I have been a regular user of the wateRmelon package since its inception, and have encountered new errors with wateRmelon_1.18.0. I was wondering if anyone has run into the same issue. Normalization using dasen() on the new Illumina EPIC chips (aka 850K) gives the following error: dasen(melon.Lumi ...
normalization watermelon methylation epic written 10 months ago by Wade Davis0
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Answer: A: hwriter or reportingtools: open link in new tab?
... Hi Andrzej, Thank you for speedy reply; it worked like a charm. Just to summarize for others using ReportingTools, what I did was add this snippet document.addEventListener("DOMContentLoaded", function() {   var links = document.links;     for (var i = 0, linksLength = links.length; i < linksL ...
written 2.6 years ago by Wade Davis0
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hwriter or reportingtools: open link in new tab?
... Does anyone have a solution using either hwriter or ReportingTools such that by default the links in the HTML open in a new tab or window when selected? Looking at hwrite(), it seems that if the "target" attribute was available as optional argument, I could pass it the value "_blank" and that would ...
reportingtools hyperlink hwriter written 2.6 years ago by Wade Davis0

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