User: lejeczek

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lejeczek0
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Posts by lejeczek

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Comment: C: BiocManager v. 3.9 - where is it?
... What BiocVersion had to do with that? Why was it the cause of the problem? ...
written 25 days ago by lejeczek0
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Comment: C: BiocManager v. 3.9 - where is it?
... Okey, it's BiocVersion which messes the whole thing up. Manually "BiocVersion" must be removed first and then BiocManager 3.9 will install properly. Any @devel, cares to explain, anybody knows - why? ...
written 25 days ago by lejeczek0
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Comment: C: BiocManager v. 3.9 - where is it?
... I'm not. Do you people really presume that everybody else is a dummy of some sort and unable to do 2 + 2 ?? ``` $ /usr/bin/R R version 3.6.0 (2019-04-26) -- "Planting of a Tree" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-redhat-linux-gnu (64-bit) > library(Bi ...
written 25 days ago by lejeczek0
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BiocManager v. 3.9 - where is it?
... hi anybody knows where is 3.9 version? It is not in CRAN that's for sure. Many thanks, L. ``` ... selection: 1 trying URL 'https://cloud.r-project.org/src/contrib/BiocManager_1.30.4.tar.gz' Content type 'application/x-gzip' length 242304 bytes (236 KB) ============================================= ...
biocmanager written 25 days ago by lejeczek0 • updated 25 days ago by Martin Morgan ♦♦ 23k
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Answer: A: different compilers and mzR build fails
... until the author fixes it, if you come across this problem, it's because you probably use something like: Sys.setenv(MAKEFLAGS = "-j15") do not. ...
written 2.6 years ago by lejeczek0
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different compilers and mzR build fails
... I'm not sure if I should bother you team with this, apologies in case it's a bother. I'm trying gcc 6.2.1 (from devtoolset-6) with R, everything seems to work just fine, except for mzR. Here is failed build: g++ -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o mzR.so cramp.o ramp_base64.o ramp.o Rc ...
mzr gcc compiler written 2.6 years ago by lejeczek0
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preferred mirrors list - permanently
... dear all is it possible to set up a list of preferred mirrors? And with the order of preference? In my Rprofile I have it but if the mirror is unavailable then biocLite fails - strange is it's incapable of falling-over to other or main repo. my profile: options(BioC_mirror = "my URL") ...
list mirror preferred written 4.2 years ago by lejeczek0 • updated 4.2 years ago by Dan Tenenbaum8.2k
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GO.db/GOSim bugged or my bad?
... hi everybody, I'm trying something seemingly simple but it segfaults and I wonder it this might be a bug? I run: " library(GOSim) library(org.Hs.eg.db) library(org.Mm.eg.db) library(GO.db) setEvidenceLevel(evidences = "all", organism=org.Hs.egORGANISM, gomap=org.Hs.egGO) calc.diffusion.kernel(me ...
software error bug go.db written 4.2 years ago by lejeczek0 • updated 4.2 years ago by Hervé Pagès ♦♦ 14k

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