User: Arman Shahrisa

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Germany
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Posts by Arman Shahrisa

<prev • 13 results • page 1 of 2 • next >
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How can I mention separate creator and correspondence in a package?
... I'm developing a Bioconductor package in which I'm a creator, author, and maintainer. But someone else is the corresponding author. Is the following code correct in the package description?   Author: c(person(first = "A****", last = "S*******",                             email = "s*************** ...
package description written 5 days ago by Arman Shahrisa0 • updated 5 days ago by Martin Morgan ♦♦ 19k
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Comment: C: I'm developing a package. How can I specify a dependent package to be installed
... Hi, My package requires "xlsx" package to export data as excel files. Even with java runtime environment installed, R returns an error during the installation of "xlsx" package. I googled it and found "install.packages("xlsxjars", INSTALL_opts = "--no-multiarch")" in a forum. It fixed the problem f ...
written 5 days ago by Arman Shahrisa0
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I'm developing a package. How can I specify a dependent package to be installed with an option?
... I'm developing a package. How can I specify a dependent package to be installed with an option? For example, inside description file: Depends: cgdsr, xlsx, gplots, RColorBrewer, rafalib, Biobase, genefilter, xlsxjars I manually install the "xlsxjars" package as "install.packages("xlsxjars", INSTA ...
package dependency written 5 days ago by Arman Shahrisa0 • updated 5 days ago by Hervé Pagès ♦♦ 12k
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Comment: C: How to create automated cbind in a for loop
... I fixed the problem. It was a "E" instead of "e". I appreciate for your time. ...
written 16 months ago by Arman Shahrisa0
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How to create automated cbind in a for loop
... How can I create an automated cbind() to use with for loop? This is the part that returns error expression <- cbind(expression, rrM.ProfileData) The following is my function genes is a character vector containing names of the desired genes. cancer is also a character vector string containin ...
loop matix written 16 months ago by Arman Shahrisa0 • updated 16 months ago by Martin Morgan ♦♦ 19k
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Comment: C: Database download ends with error for AnnotationHub
... The command "hubCache(hub)" returns the following error: Error in hubCache(hub) : error in evaluating the argument 'x' in selecting a method for function 'hubCache': Error: object 'hub' not found also > traceback() 1: hubCache(hub) So I wasn't able to remove the files by command. Instead, ...
written 2.0 years ago by Arman Shahrisa0
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Answer: A: Database download ends with error for AnnotationHub
... I don't have stable HTTPS connection. I performed your commands but every time it finishes with the same error. Is there anyway to manually download databases and put them in corresponding folder? By the way, I'm using R 3.1.3 and I can't upgrade it due to limitations of class to strictly use R 3.1 ...
written 2.0 years ago by Arman Shahrisa0
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Answer: A: Database download ends with error for AnnotationHub
... Any help would be appreciated! I think the problem is with database. Does anybody knows whether databases for older versions of AnnotationHub have been removed? ...
written 2.0 years ago by Arman Shahrisa0
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Comment: C: Database download ends with error for AnnotationHub
... Traceback():      3: unlist(.metadata(snapshotUrl, columns = "RDataPath")) 2: .snapshotPaths(snapshotUrl) 1: AnnotationHub() sessioninfo() loaded via a namespace (and not attached): [1] annotate_1.44.0 AnnotationDbi_1.28.2 [3] Biobase_2.26.0 BiocInstaller_1. ...
written 2.0 years ago by Arman Shahrisa0
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Comment: C: Where downloaded data are stored?
... I'm a man! Shahrisa is my family name! My name is Arman! Yes, I mistakenly edited my message when you were answering. By the way,your answers were perfect! I have installed multiple new packages with that command. My network connection is very restricted and unstable to HTTPS connection. That is why ...
written 2.0 years ago by Arman Shahrisa0

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