User: kmu004

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kmu00440
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k*******@ucsd.edu

Posts by kmu004

<prev • 7 results • page 1 of 1 • next >
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Comment: C: DESeq2- design matrix with multiple factors, taking gender into consideration
... Hello Michael, Sorry, I don't entirely understand. Do you mean I construct a model with no gender covariate? Just dds$group <- factor(paste0(dds$convexity, dds$cond)) But how would I then account for gender? ...
written 7 weeks ago by kmu00440
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Comment: C: DESeq2- design matrix with multiple factors, taking gender into consideration
... Then how would I extract the other contrasts such as leftDis1 vs RightDis1 (summing the effect of gender covariate) and Dis1 vs Dis2 contrast ? ...
written 7 weeks ago by kmu00440
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DESeq2- design matrix with multiple factors, taking gender into consideration
... Hello All, So, I have some data from a bone deformity study where we believe there is an effect of gender on disease and has to be accounted for before identifying differential regulation. We are also interested in the transcriptional signature on either side of the convexity. Here is what my exam ...
deseq2 multifactor interaction term gender effect 3-factors written 7 weeks ago by kmu00440 • updated 7 weeks ago by Michael Love23k
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Comment: C: ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
... Thanks, that worked :) ...
written 3.8 years ago by kmu00440
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ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
... Hello, I am trying to install the "VariantAnnotation" library and load it. Although it installs without an issue it gives me an error while loading. Any help will be much appreciated. Kavitha .......package ‘VariantAnnotation’ successfully unpacked and MD5 sums checked The downloaded binary pac ...
variantannotation error library written 3.8 years ago by kmu00440 • updated 3.8 years ago by Valerie Obenchain6.7k
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Answer: A: RDAVIDWebService Error 301: Moved Permanently
... Was wondering when the package update will be posted to address this issue? Thanks...   ...
written 3.9 years ago by kmu00440
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DESEq2 comparison with mulitple cell types under 2 conditions
... Hello, I am new to using DEseq2 and multiple factor design. I have gone through forum discussions that deal with DEseq2 and multifactorial designs. However, I would like to understand if my design for the following matrix is correct? Sample Celltype Condition 1 1 KO ...
deseq2 multiple factor design written 4.1 years ago by kmu00440 • updated 4.1 years ago by Michael Love23k

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Popular Question 3.8 years ago, created a question with more than 1,000 views. For DESEq2 comparison with mulitple cell types under 2 conditions

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