User: snigdhapola
snigdhapola • 0
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Posts by snigdhapola
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... No. If we get more than one peak in a given window size, around a gene, for a particular histone modification or transcription factor, any idea if we have to consider peak with max p-value or an average of the p-values of all the peaks in that window size ?
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written 4.3 years ago by
snigdhapola • 0
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... It is after we get a count of no of peaks corresponding to a TF or histone mark, say around 3-4kb of TSS region of a particular gene, do we go by taking an average of -log10(pvalue) of the peaks we obtained in the region or any other way ?
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written 4.4 years ago by
snigdhapola • 0
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... Hi,
how to quantify the peaks annotated to a particular genomic region in a particular window size.
Thanks,
Snigdha.
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written 4.4 years ago by
snigdhapola • 0
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... Hi,
Thank you for the response. We were trying to run it with developmental version of R and was encountering the error, even for the example data provided with the package. We tried it with R 3.2.0 and it is running fine. Thanks again for the response.
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written 4.4 years ago by
snigdhapola • 0
0
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... Hi,
I am trying to run ChiPseeker for ENCODE datasets and been getting the following error:
"Error in unlist(metadata(TXDB)) :
error in evaluating the argument 'x' in selecting a method for function 'unlist': Error in sqliteSendQuery(con, statement, bind.data) :
expired SQLiteConnection"
...
written 4.4 years ago by
snigdhapola • 0
• updated
4.4 years ago by
Guangchuang Yu • 1.1k
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