User: Zuguang Gu

gravatar for Zuguang Gu
Zuguang Gu100
Reputation:
100
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Trusted
Location:
Germany
Last seen:
2 weeks, 1 day ago
Joined:
4 years, 3 months ago
Email:
z***@dkfz.de

Posts by Zuguang Gu

<prev • 6 results • page 1 of 1 • next >
3
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Answer: C: ComplexHeatmap removes row labels if annotation is added
... Hi, that is the default behavior of the new version of the package :) because I feel they don't look nice if the row names are drawn between heatmap and row annotations, and also row names might be duplicated across parallel heatmaps. Only the row names on the most right size of all heatmaps/row ann ...
written 26 days ago by Zuguang Gu100
1
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1
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Comment: C: Align legends to each heatmap in a ComplexHeatmap with 2 heatmaps
... OK, I see. You want to put the two heatmaps together so that you can compare directly between the two heatmaps. The thing is if you add two heatmaps, the legends are always plotted together. One way I can think to improve this is to move the legends to the bottom of the heatmap: ```r hmap1 <- H ...
written 3 months ago by Zuguang Gu100
0
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Answer: A: ComplexHeatmap : can't find the arguments inherited from the previous version
... Yes, these arguments are new fro v1.99.0, you need to update the package. ...
written 3 months ago by Zuguang Gu100
2
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Answer: A: Align legends to each heatmap in a ComplexHeatmap with 2 heatmaps
... No, since you put the two heatmaps as one plot, the legends are grouped. You can either edit in Inkscape or make two heatmaps in two plots. You can get the column of the first heatmap by: ```r hmap1 = draw(hmap1) column_order = column_order(hmap1) ``` and assign to the second heatmap: ```r Heatm ...
written 3 months ago by Zuguang Gu100
2
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1
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Answer: A: Make UpSet function display numbers above the bars
... I am not sure whether it is a good idea to put numbers close to the bars, because you can easily get these numbers from the axis. Since the annotations are just simple barplots annotations, you can use `decorate_annotation()` function to add these numbers. Currently, the solution to your problem i ...
written 5 months ago by Zuguang Gu100
2
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Answer: A: Combining ComplexHeatmap with other plot types
... You can use `grid.grabExpr()` to capture the output of ComplexHeatmap as a `grob` object and later you can arrange this `grob` object by other packages which do layout. Note you need to explicitly use `draw()` on the heatmap object. grob = grid.grabExpr(draw(Heatmap(...)))  ...
written 21 months ago by Zuguang Gu100

Latest awards to Zuguang Gu

Scholar 25 days ago, created an answer that has been accepted. For A: Combining ComplexHeatmap with other plot types
Teacher 25 days ago, created an answer with at least 3 up-votes. For C: ComplexHeatmap removes row labels if annotation is added
Scholar 21 months ago, created an answer that has been accepted. For A: Combining ComplexHeatmap with other plot types
Scholar 21 months ago, created an answer that has been accepted. For A: Make UpSet function display numbers above the bars
Scholar 3.9 years ago, created an answer that has been accepted. For A: Combining ComplexHeatmap with other plot types

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