User: altuna akalin

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10
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New User
Location:
Germany/Berlin/MDC-BIMSB
Website:
http://bioinformatics....
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AltunaAkalin
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Last seen:
1 year, 2 months ago
Joined:
2 years, 6 months ago
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Posts by altuna akalin

<prev • 5 results • page 1 of 1 • next >
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Answer: A: report error of methylkit
... can you try dbtype = NA and see if the problems persists? Please also make sure you are using the latest version. If you want further assistance please send a reproducible example, https://stackoverflow.com/questions/5963269/how-to- make-a-great-r-reproducible-example On Wed, Jul 5, 2017 at 8:36 A ...
written 4 months ago by altuna akalin10
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Answer: A: error reading bismark sam/bam files
... Try to update your R and BioC, and retry. Also have a look at the similar problems mentioned here: https://groups.google.com/forum/#!forum/methylkit_discussion On Fri, Jun 16, 2017 at 1:34 PM, kamal.fartiyal84 [bioc] < noreply@bioconductor.org> wrote: > Activity on a post you are followin ...
written 5 months ago by altuna akalin10
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Answer: A: Heatmap of motif clusters
... You can't show three different motif occurrence matrices on the same heatmap with different color codings for each motif using genomation. However, you can show those in three separate heatmaps. The problem with showing all three motif position sets in one heatmap is the positions where two or more ...
written 15 months ago by altuna akalin10
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Answer: A: load methylKit segfault error
... I'm not sure if this will help but can you try to install it from github. Currently, package passes tests so it can be loaded and used on the test environments and our own machines. library(devtools) install_github("al2na/methylKit", build_vignettes=FALSE, repos=BiocInstaller::biocinstallRepos ...
written 15 months ago by altuna akalin10 • updated 15 months ago by Martin Morgan ♦♦ 20k
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Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
... Description As a bioinformatics scientist you will be a member of the Scientific Bioinformatics Platform and report to the head of the platform, Dr. Altuna Akalin. You will be responsible for data analysis and method development for genomics data sets including but not limited to high-throughput se ...
snp rnaseq chipseq job written 17 months ago by altuna akalin10

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