User: lhuang7

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lhuang70
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Lei Huang, Ph.D.
Senior Bioinformatician
Center for Research Informatics
University of Chicago

Posts by lhuang7

<prev • 7 results • page 1 of 1 • next >
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Job: Senior Bioinformatician at the University of Chicago
... We have an opening for a senior bioinformatician position at the Center for Research Informatics here in the University of Chicago. Please visit the following link if you are interested. Thanks! https://uchicago.wd5.myworkdayjobs.com/External/job/Hyde-Park-Campus/Senior-Bioinformatician_JR01794 ...
job bioinformatician job written 4 days ago by lhuang70
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Answer: A: Test for differential variability with missMethyl (DiffVar) using block design
... I got the similar warning message when calling varFit under a contrast design matrix setting (multiple comparison groups). > fitvar <- varFit(mval, design = design) Warning messages: 1: Partial NA coefficients for 466566 probe(s) The issue turns out to be a typo within the function varFit.defa ...
written 8 weeks ago by lhuang70
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Comment: C: New version of ChAMP can not proceed through champ.DMP
... I can confirm the error appears when the number of significant DMP is one. ...
written 10 months ago by lhuang70
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Comment: C: ParseMetaFromGtfFile() from SCAN.UPC package fails to produce annotation file
... Thanks for the quick fix! ...
written 10 months ago by lhuang70
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Comment: C: ParseMetaFromGtfFile() from SCAN.UPC package fails to produce annotation file
... Thanks Stephen! ...
written 10 months ago by lhuang70
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ParseMetaFromGtfFile() from SCAN.UPC package fails to produce annotation file
... Hi, I try to create an annotation file using the function ParseMetaFromGtfFile() from SCAN.UPC package but get a warning message with no output file generated. After searching the archive I found this 3-year old post related to the same issue (https://support.bioconductor.org/p/59948/). The follo ...
annotation scan.upc written 10 months ago by lhuang70 • updated 10 months ago by Stephen Piccolo510
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Re: GenesAnswers for Arabidopsis!
... Dear Fuyou, As Dr. Gilbert Feng suggested, you can create a customized GeneAnswers object as explained in the package vignette (page 5) and R code chunk #3. Since you are interested in GO terms, the following solution might be what you want. Remember the second parameter in geneAnswersBuilder is an ...
annotation go geneanswers arabidopsis written 3.1 years ago by lhuang70

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