User: csoneson
csoneson • 20
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Posts by csoneson
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Comment:
C: tximport returns NA counts
... True, but that was only for 50 cells, for which txOut=FALSE also worked, so I guess it is not yet clear whether there is a set of cells for which txOut=TRUE works but txOut=FALSE doesn't.
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written 8 months ago by
csoneson • 20
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Comment:
C: tximport returns NA counts
... I wonder if this could have to do with the automatic determination of the column types by read_tsv. By default I think it uses the first 1,000 values to determine the column type, and if these values are all 0 it may try to read the whole column as integers. This caused problems for me once (albeit ...
written 8 months ago by
csoneson • 20
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... Hi Vlad,
thanks for your reply. I tried both your suggestions (I set OMP_FLAG="--disable-openmp" on line 96 in the configure file, my line 62 is about gcc), reinstalled lpsymphony and IHW from source, started new sessions, but unfortunately IHW still uses all the available cores on the machine. I'l ...
written 9 months ago by
csoneson • 20
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... Hi,
when I run IHW on our server it uses lots of computational resources (at least 20 cores). I can't seem to find any way to modify this in the call to ihw(). Is there a way to reduce the number of cores used by IHW?
Thanks!
Example code (from the IHW package) and session info:
library(IHW)
X ...
written 9 months ago by
csoneson • 20
• updated 9 months ago by
vladislav.kim • 10
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