User: zhengx

gravatar for zhengx
zhengx10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
5 months, 2 weeks ago
Joined:
2 years, 5 months ago
Email:
z*****@u.washington.edu

Posts by zhengx

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Cannot read plink files correctly
... Start snpgdsBED2GDS ...     BED file: "lebanon_complete.bed" in the SNP-major mode (Sample X SNP)     FAM file: "lebanon_complete.bim", DONE.     BIM file: "lebanon_complete.fam", DONE. You have used the wrong FAM and BIM files.   ...
written 5 months ago by zhengx10
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Answer: A: SNPRelate Dendrogram Point Colors and Shapes
... Please try dendrapply() function, snpgdsCutTree() use dendrapply() internally to add different pch and colors.     ...
written 17 months ago by zhengx10
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Answer: A: unable to update mgcv package
... See: https://github.com/zhengxwen/SNPRelate/issues/2, you might have to modify R Makeconf file which is in the folder of R lib.     ...
written 23 months ago by zhengx10
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Comment: C: NA values in snpgdsDiss dissimilarity matrix
... Can you ran "snpgdsSampMissRate" to calculate the missing rate per sample? Then you could identify which samples cause the trouble. ...
written 23 months ago by zhengx10
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Comment: C: NA values in snpgdsDiss dissimilarity matrix
... Can you ran "snpgdsSampMissRate" to calculate the missing rate per sample? Then you could identify which samples cause the trouble. ...
written 23 months ago by zhengx10
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Answer: A: NA values in snpgdsDiss dissimilarity matrix
... Are you able to run snpgdsIBS Identity-By-State analysis? Is there any missing value in the result of IBS analysis also?   ...
written 24 months ago by zhengx10

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