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Posts by JasonLouisStein
... Hello, When accessing JASPAR2014 database using TFBSTools using the getMatrixSet() function, I see that one needs to set the options of which PWMs to retrieve. For example opts[["all_versions"]] <- TRUE siteList2 <- getMatrixSet(JASPAR2014, opts) I'm not sure what the option all_versions ...
... Hi, I'm trying to understand the normalization for DESeq2 analysis within DiffBind. If I run: Pool1 = dba.analyze(Pool1,method=DBA_DESEQ2,bFullLibrarySize=FALSE,bCorPlot=FALSE); Pool1.DB = dba.report(Pool1,file="test",method=DBA_DESEQ2,th=1,bCounts=TRUE); Then, the normalized counts contained ...
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