User: shaheryar

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shaheryar0
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Korea, Republic Of
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1 year, 11 months ago
Joined:
3 years, 6 months ago
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s********@postech.ac.kr

Posts by shaheryar

<prev • 17 results • page 1 of 2 • next >
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Where or how to find the gene interaction with itself?
... I have 31 list of genes and i want to know the method or way for how to check that which gene is interacting with itself. e.g. SP1 gene is interactiong with itself or have a loop or activating. i need reference paper or tool or website link just to use for reference. Please guide me ASAP. if anybody ...
geneexpression microarray gene interaction written 23 months ago by shaheryar0
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Answer: A: Inferring qualitative gene regulatory interactions from microarray data
... Can you please guide me how to obtain real interactions amongst genes from microarray data. like correlation returns diagonal and symmetrical matrix. I need such a correlation measure in which gene A to gene A interaction is not always equal to 1, also interaction value of gene A to Gene B must be d ...
written 2.6 years ago by shaheryar0
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Comment: C: Inferring qualitative gene regulatory interactions from microarray data
... I have read qpgraph. The problem is that it is using data with some ionteractiondb as an input but i dnt have any interaction db. i just have 24 samples og huma gene data and i want to make gene regulatory network by showing gene gene interaction. Please guide ...
written 2.6 years ago by shaheryar0
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Comment: C: How to compute Gene Regulatory Network on microarraay data
... Thanks for your ans. I dnt want to use tool. Please tell me the logic behind it. I have only microarray human data with 24 samples and i want to made gene regulatory network. and put weights on it showing positve or negative edge. ...
written 2.6 years ago by shaheryar0
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How to compute Microarray gene interaction
... I have microarray data and i want to measure gene regulatory network for that i have to compute gene gene interaction. So can one guide me how to compute that and how to put weights on gene graph. What should be the threshold value to be activator or inhibator?   Waiting Positive ...
microarray R gene interaction grn written 2.6 years ago by shaheryar0 • updated 2.6 years ago by chris86380
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How to compute Gene Regulatory Network on microarraay data
... Dear all, I need a help. I have microarray data and i want to compute interaction graph so that it can be used for qualitative analysis. Can some one help me how i can do it.  I want to compute gene gene interaction graph. Please help ...
microarray gene interaction grn written 2.6 years ago by shaheryar0 • updated 2.6 years ago by chris86380
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Inferring qualitative gene regulatory interactions from microarray data
... I want to infer gene regulatory interactions from microarray gene expression data. I have calculated correlation matrix (Pearsons correlation coefficient) on the differentially expressed genes. Further I am unable to find out regulatory interactions that which technique can be used to infer activati ...
gene regulated gene interaction regulatory network written 2.8 years ago by shaheryar0 • updated 2.6 years ago by Robert Castelo2.2k
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Comment: C: Gene Interaction Computation
... how to calculate associations from concentration levels of RNA. I am working on microarray data. Qgraph didnot solve my problem ...
written 3.1 years ago by shaheryar0
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Gene Interaction Computation
... In GRN, every gene interacts with every other gene or sometimes with itself too and every gene connects with other genes with different concentration levels how we can measure those concentration levels I compute but it is giving a symmetric matrix means A -> B and B-> A same values but we kno ...
microarray gene interaction grn written 3.1 years ago by shaheryar0 • updated 3.1 years ago by Robert Castelo2.2k
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How to convert correlation value into qualitative threshold for activation and inhibition for the construction of qualitative biological regulatory network
... Dear All,   I have computed correlation matrix for a set of 38 genes. so i have a matrix of 38*38 dimension. Now i want to compute the interaction graph (qualitative) among the 38 genes to infer complete biological network.  I can code but i want guidance about how the interaction graph will  be c ...

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Popular Question 23 months ago, created a question with more than 1,000 views. For Moderated t-test in Anova

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