User: Lauren

gravatar for Lauren
Lauren40
Reputation:
40
Status:
New User
Location:
Australia
Last seen:
4 years ago
Joined:
4 years ago
Email:
l*************@gmail.com

Posts by Lauren

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Comment: C: Memory usage for bplapply -- is the entire environment copied over to each worke
... Hi, I am operating on a Linux based OS (Ubuntu) and the experiment is 600 samples by 100,000 species (it is a metagenomic/amplicon study). ...
written 4.0 years ago by Lauren40
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Comment: C: Memory usage for bplapply -- is the entire environment copied over to each worke
... I cleaned my environment up before running again (the parent session is now using 2Gb). I was looking at the RAM usage on top (each child process was reported to be using 2Gb). But I just noticed that if I look at RAM usage via the System Monitor,  it is only 650Mb per child thread. I will install t ...
written 4.0 years ago by Lauren40
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Memory usage for bplapply -- is the entire environment copied over to each worker thread?
... Hello, I am conducting an analysis of RNA seq data with DESeq2, and I noticed that when I run DESeq2 in parallel (using the parallel=TRUE option), each worker thread uses the same amount of RAM as the parent session/thread. In my case, the parent session/thread has a number of objects  in memory -- ...
deseq2 biocparallel bplapply written 4.0 years ago by Lauren40 • updated 4.0 years ago by Valerie Obenchain6.7k

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