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Posts by ankur.chakravarthy.10
... Hrishi, much of the power of single cell RNA-seq lies in the ability to detect rare or novel populations, and much of the literature on markers is often limited because of the small number of markers people were looking at in prior studies or the abundance of these populations in bulk data. No pre-d ...
... Hi there, I'm basically dealing with two scenarios here - one is using Census from Monocle2 to convert scRNAseq data with no spike-ins or spike-in normalisation using scran. My downstream workflow uses Seurat to carry out clustering, population discovery et cetera so I want to know if the best thi ...
... Dear list users, I am trying to test if a given, predefined set of genes is differentially expressed between two groups in an RNA-seq experiment (count data, using voom) . I am therefore interested in only evaluating the hypothesis of differential expression within my set, so as to limit the burde ...
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