User: tj.hu

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tj.hu10
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New User
Location:
United States
Last seen:
2 years, 2 months ago
Joined:
2 years, 4 months ago
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t****@ucsf.edu

Posts by tj.hu

<prev • 2 results • page 1 of 1 • next >
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Scaling genes to have unit variance for clustering / heatmaps with DESeq2
... Hi, I'm trying to cluster rows and columns in DESeq2 and show it in a heatmap. I've tried this: heatmap.2(assay(vst)[select,], col = hmcol,           Rowv = T, Colv = T, scale="row", trace="none", margin=c(8, 8))   I think my problem is revealed when the scale = 'row', the genes don't seem clust ...
deseq2 heatmap.2 bicluster pheatmap written 2.2 years ago by tj.hu10 • updated 27 days ago by Michael Love15k
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How do I extract the principal components in DESeq2?
... Hi, I am using DESeq2 and after the rld transformation I plotted the PCA and found an interesting result. However, I don't know how to extract the PC data. I want to know what the Principal Components actually are (I believe it's a weighted gene list so I want to know the weights?). I would also li ...
deseq2 pca written 2.4 years ago by tj.hu10 • updated 2.4 years ago by Michael Love15k

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Popular Question 2.2 years ago, created a question with more than 1,000 views. For How do I extract the principal components in DESeq2?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For How do I extract the principal components in DESeq2?

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