User: holgerbrandl

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holgerbrandl10
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Germany
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5 months ago
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2 years, 4 months ago
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Posts by holgerbrandl

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Comment: C: lpsymphony install on Ubuntu
... It seems the problem made it into the 3.5 bioc release: ../include/sym_constants.h:358:1: error: ISO C++ forbids converting a string constant to 'char*' [-Wpedantic] Is there any way to install it without patching the lpsymphony sources manually? ...
written 5 months ago by holgerbrandl10
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Answer: A: Mapping Probes to a Genome
... If you don't have to may probes of differeing length (which does not allow for direct usage of vmatchPDict you could aksi simply iterate with purr/dplyr require(purrr) require(dplyr) require(Biostrings) require(BSgenome.Dmelanogaster.UCSC.dm3) mappedPrimers = primerInfo %>% mutate(mapped=m ...
written 6 months ago by holgerbrandl10
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error when rendering pathway with pathview package
... Hi, I'm having a problem with the pathview package and I hope this is the right forum to report it. It generally works fine but struggles for a particular pathway, which is mmu04723. Here's an example: sliceData = structure(list(d2_vs_d0 = c(-1.52126820312977, 0.451509702732841, -0.3577074157754 ...
pathview written 7 months ago by holgerbrandl10 • updated 6 months ago by Luo Weijun1.4k

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