User: Methyl

gravatar for Methyl
Methyl50
Reputation:
50
Status:
New User
Location:
United Kingdom
Last seen:
3 years, 4 months ago
Joined:
3 years, 7 months ago
Email:
a****@cam.ac.uk

Posts by Methyl

<prev • 5 results • page 1 of 1 • next >
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read.450k error in minfi
... I have recently installed in the new version of R together with the new version of Bioconductor and minfi.  At the moment read.450k() is giving an error since the base directory is being duplicated in the Basname column.  I found a way around this by not specifying the base argument in read.450k.exp ...
minfi written 3.4 years ago by Methyl50
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estimateCellCounts - Error in combine(pDataX, pDataY) in minfi
... There is a problem with the current estimateCellCounts() function which gives the following error when running: > combinedRGset <- combine(rgSet, referenceRGset) Error in combine(pDataX, pDataY) : data.frames contain conflicting data:         non-conforming colname(s): Slide   I tried to de ...
minfi flowsorted.blood.450k written 3.4 years ago by Methyl50
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Answer: A: Minfi error with new R and bioconductor update
... R version 3.2.2 (2015-08-14) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Server release 6.7 (Santiago) locale:  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF ...
written 3.4 years ago by Methyl50
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Answer: A: minfi - estimateCellCount
... Thanks that explains it better!   ...
written 3.6 years ago by Methyl50
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minfi - estimateCellCount
... I'm trying to understand what the estimateCellCounts() function returns when returnAll=TRUE is specified.  Currently the method description lacks details and just says "Should the composition table and the normalized user supplied data be return?".  Does anyone know what "counts" "compTable" and "no ...
minfi written 3.7 years ago by Methyl50

Latest awards to Methyl

Appreciated 3.4 years ago, created a post with more than 5 votes. For minfi - estimateCellCount
Student 3.4 years ago, asked a question with at least 3 up-votes. For minfi - estimateCellCount

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