User: Eugene

gravatar for Eugene
Eugene0
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United States
Website:
http://www.txbiomed.or...
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2 years, 2 months ago
Joined:
2 years, 4 months ago
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E*******@yahoo.com

Posts by Eugene

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Comment: C: mzR installation error: "unable to load shared object"
... OK. Finally, our system administrator reinstalled NetCDF from rpm, and I successively installed mzR. ...
written 2.3 years ago by Eugene0
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Comment: C: mzR installation error: "unable to load shared object"
... With zlib directories, included in PATH and LD_LIBRARY_PATH, I rebuilt R twice: With --enable-R-shlib I have    > ls -lh mzR.so -rwxr-xr-x 1 eugeneid genetics 51M Aug  1 15:26 mzR.so   > /R CMD ldd mzR.so | wc -l   16 and undefined symbols are the same as previous. Without --enable-R-shlib I g ...
written 2.3 years ago by Eugene0
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Comment: C: mzR installation error: "unable to load shared object"
... I installed zlib, included it in PATH and LD_LIBRARY_PATH, and got mzR.so of 73 MB containing 17 libraries with the same error message: ldd /master/eugeneid/bin/R-3.2.1/library/mzR/libs/mzR.so linux-vdso.so.1 => (0x00007fffa21ff000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007 ...
written 2.3 years ago by Eugene0
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Comment: C: mzR installation error: "unable to load shared object"
... Thank you for the idea: I found that I did not have libR.so, I reinstalled R with    ./configure --enable-R-shlib --enable-R-static-lib --enable-BLAS-shlib and now libR.so is presented in mzR.so. The error message is the same, but the list of undefined symbols is much shorter: dd -r /master/eugen ...
written 2.3 years ago by Eugene0
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Comment: C: mzR installation error: "unable to load shared object"
... I get exactly the  same, full output: >---------------------- R CMD ldd -r /master/eugeneid/bin/R-3.2.1/library/mzR/libs/mzR.so     linux-vdso.so.1 =>  (0x00007fff7f5fd000)     libpthread.so.0 => /lib64/libpthread.so.0 (0x00002ae6d8866000)     libnetcdf.so.7 => /master/eugeneid/bin/net ...
written 2.3 years ago by Eugene0
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Comment: C: mzR installation error: "unable to load shared object"
... Yes, I began with biocLite("mzR") ,  got that error message, and only after that I ran:    R CMD INSTALL --no-clean-on-error  mzR_2.2.1.tar.gz. sessionInfo() R version 3.2.1 (2015-06-18) Platform: x86_64-unknown-linux-gnu (64-bit) locale:  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               ...
written 2.3 years ago by Eugene0
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Comment: C: mzR installation error: "unable to load shared object"
... I do not have administrative rights, so I use files where they were located during installations. As mzR uses NetCDR, I included its subdirectories bin/, lib/, and include/ in my PATH according to the installation instructions for ncdf ( https://cran.r-project.org/web/packages/ncdf/INSTALL ) and xcm ...
written 2.3 years ago by Eugene0
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Comment: C: mzR installation error: "unable to load shared object"
... Thank you for the fast response. Sorry for misleading, I mixed output from two different attempts of installation: of mzR 2.2.1 and mzR 2.3.1. I tried several versions of mzR and R, result is the same - the same error messages.   ...
written 2.3 years ago by Eugene0
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mzR installation error: "unable to load shared object"
... First time I try to install mzR using Bioconductor or   R CMD INSTALL --no-clean-on-error --no-multiarch mzR_2.3.1.tar.gz and I always get message: ... gcc -std=gnu99 -I/master/eugeneid/bin/R-3.2.1/include -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I. -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -DWITHOUT_ ...
mzr installation written 2.3 years ago by Eugene0

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Popular Question 2.2 years ago, created a question with more than 1,000 views. For mzR installation error: "unable to load shared object"

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