User: kielpinski

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kielpinski0
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Posts by kielpinski

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Answer: A: getting masked sequence from BSgenome: can I use Views or getSeq?
... Dear Malcolm, Just to warn future users: getSeqHardMasked  is not strand aware.   ...
written 2.0 years ago by kielpinski0
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maskedBSgenome - cannot enable masks
... Dear All, I am trying to figure out how to use the masked BSgenome object - I want to enable ALL masks. Following help for "bsapply" I tried: library(BSgenome.Hsapiens.UCSC.hg19.masked) hg19 <- BSgenome.Hsapiens.UCSC.hg19.masked param <- new("BSParams", X = hg19) param@maskList <- c(AGA ...
bsgenome mask written 2.0 years ago by kielpinski0

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